petermr repositories

Many of these repos are widely used in collaborative projects and include:

• code
• data
• projects

This special repo is to coordinate navigation and discussion

discussion lists

The "Discussions" for this repo https://github.com/petermr/petermr/discussions include discussions for the other repos and are of indicated byb their name. They may replace our (private) Slack for all public-facing material (private project management will remain on Slack).

active repos

• https://github.com/petermr/pygetpapers. automatic downloading of articles and preprints in bulk. Pioneered by Rik Smith-Unna and ported to Python by @ayush garg. CLI. PyPi: https://pypi.org/project/pygetpapers/
• https://github.com/petermr/pyami. Port of Java https://github.com/petermr/ami3 to Python (@petermr). CLI. Includes a prototype GUI in tkinter. PyPi: https://pypi.org/project/py4ami/ (Note there is already an unrelated pyAMI in PyPi so in that namespace we are py4ami, but on Github it's pyami)
• https://github.com/petermr/pyamiimage. Analysis of scientific duagrams (@petermr, @anuvc). No CLI, or PyPI yet.
• https://github.com/petermr/docanalysis. Text-based analysis of scientific articles (@shweatahegde). CLI under dev. No PyPi yet.
• https://github.com/petermr/cevopen. Projects, dictionaries and outreach for analysing articles in plant sciences.
• https://github.com/petermr/openvirus. Projects, dictionaries and outreach for analysing articles on viral epidemics.
• https://github.com/petermr/crops. NIPGR-intern projects on crops. Minicorpora and dictionaries for terpene synthases
• https://github.com/petermr/opendiagram. Adaptation of pyamiimage to extract data from diagrams, especially materials science/batteries
• https://github.com/petermr/dictionary. Software for distributed dictionaries and many dictionaries