Update all links to in progress jiras to issues

examples/java/src/main/java/org/apache/beam/examples/common/ExampleUtils.java

@@ -63,7 +63,7 @@
  * <p>It is used to run Beam examples.
  */
 @SuppressWarnings({
-  "nullness" // TODO(https://issues.apache.org/jira/browse/BEAM-10402)
+  "nullness" // TODO(https://github.com/apache/beam/issues/20497)
 })
 public class ExampleUtils {
 

examples/java/src/main/java/org/apache/beam/examples/complete/AutoComplete.java

@@ -96,7 +96,7 @@
  * received.
  */
 @SuppressWarnings({
-  "nullness" // TODO(https://issues.apache.org/jira/browse/BEAM-10402)
+  "nullness" // TODO(https://github.com/apache/beam/issues/20497)
 })
 public class AutoComplete {
 

examples/java/src/main/java/org/apache/beam/examples/complete/TrafficMaxLaneFlow.java

@@ -87,7 +87,7 @@
  * and then exits.
  */
 @SuppressWarnings({
-  "nullness" // TODO(https://issues.apache.org/jira/browse/BEAM-10402)
+  "nullness" // TODO(https://github.com/apache/beam/issues/20497)
 })
 public class TrafficMaxLaneFlow {
 

examples/java/src/main/java/org/apache/beam/examples/complete/TrafficRoutes.java

@@ -92,7 +92,7 @@
  * and then exits.
  */
 @SuppressWarnings({
-  "nullness" // TODO(https://issues.apache.org/jira/browse/BEAM-10402)
+  "nullness" // TODO(https://github.com/apache/beam/issues/20497)
 })
 public class TrafficRoutes {
 

examples/java/src/main/java/org/apache/beam/examples/complete/game/StatefulTeamScore.java

@@ -77,7 +77,7 @@
  * the same topic to which the Injector is publishing.
  */
 @SuppressWarnings({
-  "nullness", // TODO(https://issues.apache.org/jira/browse/BEAM-10402)
+  "nullness", // TODO(https://github.com/apache/beam/issues/20497)
   "unused" // TODO(BEAM-13271): Remove when new version of errorprone is released (2.11.0)
 })
 public class StatefulTeamScore extends LeaderBoard {

examples/java/src/main/java/org/apache/beam/examples/complete/game/UserScore.java

@@ -71,7 +71,7 @@
  * data.
  */
 @SuppressWarnings({
-  "nullness" // TODO(https://issues.apache.org/jira/browse/BEAM-10402)
+  "nullness" // TODO(https://github.com/apache/beam/issues/20497)
 })
 public class UserScore {
 

examples/java/src/main/java/org/apache/beam/examples/complete/game/injector/Injector.java

@@ -76,7 +76,7 @@
  * }</pre>
  */
 @SuppressWarnings({
-  "nullness" // TODO(https://issues.apache.org/jira/browse/BEAM-10402)
+  "nullness" // TODO(https://github.com/apache/beam/issues/20497)
 })
 class Injector {
   private static Pubsub pubsub;

examples/java/src/main/java/org/apache/beam/examples/complete/game/utils/WriteToBigQuery.java

@@ -40,7 +40,7 @@
  * field names and types, as well as lambda functions that describe how to generate their values.
  */
 @SuppressWarnings({
-  "nullness" // TODO(https://issues.apache.org/jira/browse/BEAM-10402)
+  "nullness" // TODO(https://github.com/apache/beam/issues/20497)
 })
 public class WriteToBigQuery<InputT> extends PTransform<PCollection<InputT>, PDone> {
 

examples/java/src/main/java/org/apache/beam/examples/complete/game/utils/WriteToText.java

@@ -48,7 +48,7 @@
  * well as lambda functions that describe how to generate their values.
  */
 @SuppressWarnings({
-  "nullness" // TODO(https://issues.apache.org/jira/browse/BEAM-10402)
+  "nullness" // TODO(https://github.com/apache/beam/issues/20497)
 })
 public class WriteToText<InputT> extends PTransform<PCollection<InputT>, PDone> {
 

examples/java/src/main/java/org/apache/beam/examples/cookbook/TriggerExample.java

@@ -123,7 +123,7 @@
  * and then exits.
  */
 @SuppressWarnings({
-  "nullness" // TODO(https://issues.apache.org/jira/browse/BEAM-10402)
+  "nullness" // TODO(https://github.com/apache/beam/issues/20497)
 })
 public class TriggerExample {
   // Numeric value of fixed window duration, in minutes

examples/java/src/main/java/org/apache/beam/examples/snippets/Snippets.java

@@ -116,8 +116,8 @@
 
 /** Code snippets used in webdocs. */
 @SuppressWarnings({
-  "rawtypes", // TODO(https://issues.apache.org/jira/browse/BEAM-10556)
-  "nullness", // TODO(https://issues.apache.org/jira/browse/BEAM-10402)
+  "rawtypes", // TODO(https://github.com/apache/beam/issues/20447)
+  "nullness", // TODO(https://github.com/apache/beam/issues/20497)
   "unused" // TODO(BEAM-13271): Remove when new version of errorprone is released (2.11.0)
 })
 public class Snippets {

examples/java/src/main/java/org/apache/beam/examples/snippets/transforms/io/gcp/bigquery/BigQueryMyData.java

@@ -34,7 +34,7 @@
 import org.apache.beam.sdk.coders.DefaultCoder;
 
 @SuppressWarnings({
-  "nullness" // TODO(https://issues.apache.org/jira/browse/BEAM-10402)
+  "nullness" // TODO(https://github.com/apache/beam/issues/20497)
 })
 class BigQueryMyData {
 

examples/java/src/main/java/org/apache/beam/examples/subprocess/configuration/SubProcessConfiguration.java

@@ -23,7 +23,7 @@
  * Configuration file used to setup the Process kernel for execution of the external library Values
  * are copied from the Options to all them to be Serializable.
  */
-@SuppressWarnings({"serial", "nullness"}) // TODO(https://issues.apache.org/jira/browse/BEAM-10402)
+@SuppressWarnings({"serial", "nullness"}) // TODO(https://github.com/apache/beam/issues/20497)
 public class SubProcessConfiguration implements Serializable {
 
   // Source GCS directory where the C++ library is located gs://bucket/tests

examples/java/src/main/java/org/apache/beam/examples/subprocess/kernel/SubProcessCommandLineArgs.java

@@ -22,7 +22,7 @@
 
 /** Parameters to the sub-process, has tuple of ordinal position and the value. */
 @SuppressWarnings({
-  "nullness" // TODO(https://issues.apache.org/jira/browse/BEAM-10402)
+  "nullness" // TODO(https://github.com/apache/beam/issues/20497)
 })
 public class SubProcessCommandLineArgs {
 

examples/java/src/main/java/org/apache/beam/examples/subprocess/kernel/SubProcessKernel.java

@@ -34,7 +34,7 @@
  * This is the process kernel which deals with exec of the subprocess. It also deals with all I/O.
  */
 @SuppressWarnings({
-  "nullness" // TODO(https://issues.apache.org/jira/browse/BEAM-10402)
+  "nullness" // TODO(https://github.com/apache/beam/issues/20497)
 })
 public class SubProcessKernel {
 

examples/java/src/main/java/org/apache/beam/examples/subprocess/utils/ExecutableFile.java

@@ -24,7 +24,7 @@
 /** Contains the configuration for the external library. */
 @DefaultCoder(AvroCoder.class)
 @SuppressWarnings({
-  "nullness" // TODO(https://issues.apache.org/jira/browse/BEAM-10402)
+  "nullness" // TODO(https://github.com/apache/beam/issues/20497)
 })
 public class ExecutableFile {
 

examples/java/src/main/java/org/apache/beam/examples/subprocess/utils/FileUtils.java

@@ -37,7 +37,7 @@
 
 /** Utilities for dealing with movement of files from object stores and workers. */
 @SuppressWarnings({
-  "nullness" // TODO(https://issues.apache.org/jira/browse/BEAM-10402)
+  "nullness" // TODO(https://github.com/apache/beam/issues/20497)
 })
 public class FileUtils {
 

examples/java/src/test/java/org/apache/beam/examples/complete/game/HourlyTeamScoreTest.java

@@ -48,7 +48,7 @@
  */
 @RunWith(JUnit4.class)
 @SuppressWarnings({
-  "rawtypes" // TODO(https://issues.apache.org/jira/browse/BEAM-10556)
+  "rawtypes" // TODO(https://github.com/apache/beam/issues/20447)
 })
 public class HourlyTeamScoreTest implements Serializable {
 

examples/notebooks/documentation/transforms/python/elementwise/pardo-py.ipynb

@@ -365,7 +365,7 @@
     "\n",
     "> *Known issues:*\n",
     ">\n",
-    "> * [[BEAM-7340]](https://issues.apache.org/jira/browse/BEAM-7340)\n",
+    "> * [[BEAM-7340]](https://github.com/apache/beam/issues/19394)\n",
     ">   `DoFn.teardown()` metrics are lost."
    ]
   },

gradle.properties

@@ -28,7 +28,7 @@ signing.gnupg.useLegacyGpg=true
 # project version defined here in the `apply` function in
 # buildSrc/src/main/groovy/org/apache/beam/gradle/BeamModulePlugin.groovy.
 # To build a custom Beam version make sure you change it in both places, see
-# https://issues.apache.org/jira/browse/BEAM-14051.
+# https://github.com/apache/beam/issues/21302.
 version=2.40.0-SNAPSHOT
 sdk_version=2.40.0.dev
 

runners/core-construction-java/src/main/java/org/apache/beam/runners/core/construction/AvroGenericCoderRegistrar.java

@@ -26,7 +26,7 @@
 /** Coder registrar for AvroGenericCoder. */
 @AutoService(CoderTranslatorRegistrar.class)
 @SuppressWarnings({
-  "rawtypes" // TODO(https://issues.apache.org/jira/browse/BEAM-10556)
+  "rawtypes" // TODO(https://github.com/apache/beam/issues/20447)
 })
 public class AvroGenericCoderRegistrar implements CoderTranslatorRegistrar {
   public static final String AVRO_CODER_URN = "beam:coder:avro:generic:v1";

runners/core-construction-java/src/main/java/org/apache/beam/runners/core/construction/CoderTranslation.java

@@ -36,8 +36,8 @@
 
 /** Converts to and from Beam Runner API representations of {@link Coder Coders}. */
 @SuppressWarnings({
-  "rawtypes", // TODO(https://issues.apache.org/jira/browse/BEAM-10556)
-  "nullness" // TODO(https://issues.apache.org/jira/browse/BEAM-10402)
+  "rawtypes", // TODO(https://github.com/apache/beam/issues/20447)
+  "nullness" // TODO(https://github.com/apache/beam/issues/20497)
 })
 public class CoderTranslation {
 

runners/core-construction-java/src/main/java/org/apache/beam/runners/core/construction/CoderTranslatorRegistrar.java

@@ -22,7 +22,7 @@
 
 /** A registrar of {@link Coder} URNs to the associated {@link CoderTranslator}. */
 @SuppressWarnings({
-  "rawtypes" // TODO(https://issues.apache.org/jira/browse/BEAM-10556)
+  "rawtypes" // TODO(https://github.com/apache/beam/issues/20447)
 })
 public interface CoderTranslatorRegistrar {
   /**

runners/core-construction-java/src/main/java/org/apache/beam/runners/core/construction/CombineTranslation.java

@@ -49,7 +49,7 @@
  * RunnerApi.CombinePayload} protos.
  */
 @SuppressWarnings({
-  "rawtypes" // TODO(https://issues.apache.org/jira/browse/BEAM-10556)
+  "rawtypes" // TODO(https://github.com/apache/beam/issues/20447)
 })
 public class CombineTranslation {
 

runners/core-construction-java/src/main/java/org/apache/beam/runners/core/construction/CreatePCollectionViewTranslation.java

@@ -45,7 +45,7 @@
  */
 @Deprecated
 @SuppressWarnings({
-  "rawtypes" // TODO(https://issues.apache.org/jira/browse/BEAM-10556)
+  "rawtypes" // TODO(https://github.com/apache/beam/issues/20447)
 })
 public class CreatePCollectionViewTranslation {
 

runners/core-construction-java/src/main/java/org/apache/beam/runners/core/construction/DefaultArtifactResolver.java

@@ -35,7 +35,7 @@
  * same artifact.
  */
 @SuppressWarnings({
-  "nullness" // TODO(https://issues.apache.org/jira/browse/BEAM-10402)
+  "nullness" // TODO(https://github.com/apache/beam/issues/20497)
 })
 public class DefaultArtifactResolver implements ArtifactResolver {
   public static final ArtifactResolver INSTANCE = new DefaultArtifactResolver();

runners/core-construction-java/src/main/java/org/apache/beam/runners/core/construction/DisplayDataTranslation.java

@@ -31,7 +31,7 @@
 
 /** Utilities for going to/from DisplayData protos. */
 @SuppressWarnings({
-  "nullness" // TODO(https://issues.apache.org/jira/browse/BEAM-10402)
+  "nullness" // TODO(https://github.com/apache/beam/issues/20497)
 })
 public class DisplayDataTranslation {
   public static final String LABELLED = "beam:display_data:labelled:v1";

runners/core-construction-java/src/main/java/org/apache/beam/runners/core/construction/Environments.java

@@ -62,7 +62,7 @@
 
 /** Utilities for interacting with portability {@link Environment environments}. */
 @SuppressWarnings({
-  "nullness" // TODO(https://issues.apache.org/jira/browse/BEAM-10402)
+  "nullness" // TODO(https://github.com/apache/beam/issues/20497)
 })
 public class Environments {
 

runners/core-construction-java/src/main/java/org/apache/beam/runners/core/construction/External.java

@@ -72,8 +72,8 @@
  */
 @Experimental(Kind.PORTABILITY)
 @SuppressWarnings({
-  "rawtypes", // TODO(https://issues.apache.org/jira/browse/BEAM-10556)
-  "nullness" // TODO(https://issues.apache.org/jira/browse/BEAM-10402)
+  "rawtypes", // TODO(https://github.com/apache/beam/issues/20447)
+  "nullness" // TODO(https://github.com/apache/beam/issues/20497)
 })
 public class External {
   private static final String EXPANDED_TRANSFORM_BASE_NAME = "external";

runners/core-construction-java/src/main/java/org/apache/beam/runners/core/construction/ExternalTranslation.java

@@ -33,7 +33,7 @@
 
 /** Translating External transforms to proto. */
 @SuppressWarnings({
-  "rawtypes" // TODO(https://issues.apache.org/jira/browse/BEAM-10556)
+  "rawtypes" // TODO(https://github.com/apache/beam/issues/20447)
 })
 public class ExternalTranslation {
   public static final String EXTERNAL_TRANSFORM_URN = "beam:transform:external:v1";

runners/core-construction-java/src/main/java/org/apache/beam/runners/core/construction/FlattenTranslator.java

@@ -32,7 +32,7 @@
  * Utility methods for translating a {@link Assign} to and from {@link RunnerApi} representations.
  */
 @SuppressWarnings({
-  "rawtypes" // TODO(https://issues.apache.org/jira/browse/BEAM-10556)
+  "rawtypes" // TODO(https://github.com/apache/beam/issues/20447)
 })
 public class FlattenTranslator implements TransformPayloadTranslator<Flatten.PCollections<?>> {
 

runners/core-construction-java/src/main/java/org/apache/beam/runners/core/construction/ForwardingPTransform.java

@@ -34,8 +34,8 @@
  * #delegate()}, which returns the object to forward calls to, and {@link #expand(PInput)}.
  */
 @SuppressWarnings({
-  "rawtypes", // TODO(https://issues.apache.org/jira/browse/BEAM-10556)
-  "nullness" // TODO(https://issues.apache.org/jira/browse/BEAM-10402)
+  "rawtypes", // TODO(https://github.com/apache/beam/issues/20447)
+  "nullness" // TODO(https://github.com/apache/beam/issues/20497)
 })
 public abstract class ForwardingPTransform<InputT extends PInput, OutputT extends POutput>
     extends PTransform<InputT, OutputT> {

runners/core-construction-java/src/main/java/org/apache/beam/runners/core/construction/GroupByKeyTranslation.java

@@ -32,7 +32,7 @@
  * representations.
  */
 @SuppressWarnings({
-  "rawtypes" // TODO(https://issues.apache.org/jira/browse/BEAM-10556)
+  "rawtypes" // TODO(https://github.com/apache/beam/issues/20447)
 })
 public class GroupByKeyTranslation {
 

runners/core-construction-java/src/main/java/org/apache/beam/runners/core/construction/GroupIntoBatchesTranslation.java

@@ -29,7 +29,7 @@
 import org.apache.beam.vendor.guava.v26_0_jre.com.google.common.collect.ImmutableMap;
 
 @SuppressWarnings({
-  "rawtypes", // TODO(https://issues.apache.org/jira/browse/BEAM-10556)
+  "rawtypes", // TODO(https://github.com/apache/beam/issues/20447)
 })
 public class GroupIntoBatchesTranslation {
   /**

runners/core-construction-java/src/main/java/org/apache/beam/runners/core/construction/ImpulseTranslation.java

@@ -32,7 +32,7 @@
  * Utility methods for translating a {@link Impulse} to and from {@link RunnerApi} representations.
  */
 @SuppressWarnings({
-  "rawtypes" // TODO(https://issues.apache.org/jira/browse/BEAM-10556)
+  "rawtypes" // TODO(https://github.com/apache/beam/issues/20447)
 })
 public class ImpulseTranslation {
   private static class ImpulseTranslator implements TransformPayloadTranslator<Impulse> {

runners/core-construction-java/src/main/java/org/apache/beam/runners/core/construction/ModelCoderRegistrar.java

@@ -47,10 +47,10 @@
 /** The {@link CoderTranslatorRegistrar} for coders which are shared across languages. */
 @AutoService(CoderTranslatorRegistrar.class)
 @SuppressWarnings({
-  "rawtypes", // TODO(https://issues.apache.org/jira/browse/BEAM-10556)
+  "rawtypes", // TODO(https://github.com/apache/beam/issues/20447)
   "nullness",
   "keyfor"
-}) // TODO(https://issues.apache.org/jira/browse/BEAM-10402)
+}) // TODO(https://github.com/apache/beam/issues/20497)
 public class ModelCoderRegistrar implements CoderTranslatorRegistrar {
 
   // The URNs for coders which are shared across languages

runners/core-construction-java/src/main/java/org/apache/beam/runners/core/construction/PTransformMatchers.java

@@ -49,7 +49,7 @@
  * UrnPTransformMatcher.
  */
 @SuppressWarnings({
-  "rawtypes" // TODO(https://issues.apache.org/jira/browse/BEAM-10556)
+  "rawtypes" // TODO(https://github.com/apache/beam/issues/20447)
 })
 public class PTransformMatchers {
 

runners/core-construction-java/src/main/java/org/apache/beam/runners/core/construction/PTransformReplacements.java

@@ -28,7 +28,7 @@
 import org.apache.beam.vendor.guava.v26_0_jre.com.google.common.collect.Iterables;
 
 /** */
-@SuppressWarnings({"nullness", "keyfor"}) // TODO(https://issues.apache.org/jira/browse/BEAM-10402)
+@SuppressWarnings({"nullness", "keyfor"}) // TODO(https://github.com/apache/beam/issues/20497)
 public class PTransformReplacements {
   /**
    * Gets the singleton input of an {@link AppliedPTransform}, ignoring any additional inputs

runners/core-construction-java/src/main/java/org/apache/beam/runners/core/construction/PTransformTranslation.java

@@ -60,10 +60,10 @@
  * buffers}.
  */
 @SuppressWarnings({
-  "rawtypes", // TODO(https://issues.apache.org/jira/browse/BEAM-10556)
+  "rawtypes", // TODO(https://github.com/apache/beam/issues/20447)
   "nullness",
   "keyfor"
-}) // TODO(https://issues.apache.org/jira/browse/BEAM-10402)
+}) // TODO(https://github.com/apache/beam/issues/20497)
 public class PTransformTranslation {
   // We specifically copy the values here so that they can be used in switch case statements
   // and we validate that the value matches the actual URN in the static block below.

runners/core-construction-java/src/main/java/org/apache/beam/runners/core/construction/ParDoTranslation.java

@@ -87,7 +87,7 @@
 
 /** Utilities for interacting with {@link ParDo} instances and {@link ParDoPayload} protos. */
 @SuppressWarnings({
-  "rawtypes" // TODO(https://issues.apache.org/jira/browse/BEAM-10556)
+  "rawtypes" // TODO(https://github.com/apache/beam/issues/20447)
 })
 public class ParDoTranslation {
   /**

runners/core-construction-java/src/main/java/org/apache/beam/runners/core/construction/ReadTranslation.java

@@ -46,7 +46,7 @@
  * ReadPayload} protos.
  */
 @SuppressWarnings({
-  "rawtypes" // TODO(https://issues.apache.org/jira/browse/BEAM-10556)
+  "rawtypes" // TODO(https://github.com/apache/beam/issues/20447)
 })
 public class ReadTranslation {
   private static final String JAVA_SERIALIZED_BOUNDED_SOURCE = "beam:java:boundedsource:v1";

runners/core-construction-java/src/main/java/org/apache/beam/runners/core/construction/RehydratedComponents.java

@@ -43,7 +43,7 @@
  * {@link PCollection} and nice-to-have for other objects.
  */
 @SuppressWarnings({
-  "nullness" // TODO(https://issues.apache.org/jira/browse/BEAM-10402)
+  "nullness" // TODO(https://github.com/apache/beam/issues/20497)
 })
 public class RehydratedComponents {
   private final Components components;