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34 Open 71 Closed
34 Open 71 Closed
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Issues list

MaxBin2 outputs
#237 opened Oct 21, 2024 by UniAlberta
Add more component
#236 opened Mar 30, 2023 by ayooluwaB
bwa gatk not found
#235 opened Jan 30, 2023 by Rohit-Satyam
Adding to Galaxy?
#234 opened Apr 29, 2021 by ajkarloss
Errors with spades bug Something isn't working
#233 opened Sep 16, 2020 by drpturner
@cimendes
18
add ConFindr
#231 opened Mar 17, 2020 by cimendes
New additions in flowcraft/templates not included/updated after build and install
#229 opened Jan 10, 2020 by parvsachdeva
Nextflow "set" input has been discontinued bug Something isn't working engine high priority
#228 opened Dec 17, 2019 by cimendes
@cimendes
using my own Docker from Gitlab
#225 opened Sep 30, 2019 by AKWB
9
Unable to obtain final report for simple assembly pipeline
#220 opened Aug 28, 2019 by rfm-targa
1
Python3 syntax errors bug Something isn't working mid/low priority
#219 opened Aug 16, 2019 by t0rrant 1.5.0
1
3
Integrity coverage fails bug Something isn't working high priority
#218 opened Aug 14, 2019 by TheSequencingCenter 1.5.0
15
Bash errors when running nextflow with latest version (19.07.0) bug Something isn't working engine high priority
#217 opened Aug 6, 2019 by cimendes 1.5.0
2
Change docs instructions from using 'templates' as submodule documentation mid/low priority
#215 opened Aug 6, 2019 by cometsong 1.5.0
1
ectyper component Components enhancement New feature or request
#203 opened Jun 6, 2019 by cimendes
mobsuite component Components enhancement New feature or request
#202 opened Jun 6, 2019 by cimendes
Flowcraft report instructions enhancement New feature or request
#201 opened Apr 19, 2019 by jacarrico 1.5.0
momps, mlst results overwrite when pipeline is resumed bug Something isn't working help wanted Extra attention is needed
#195 opened Feb 18, 2019 by cimendes
@bfrgoncalves @cimendes
1
true_coverage module in innuca recipe bug Something isn't working recipe
#193 opened Feb 7, 2019 by cimendes
@cimendes
remove trimmomatic log enhancement New feature or request
#192 opened Feb 6, 2019 by cimendes
@cimendes
1
Automatically set local executor CPU limit enhancement New feature or request
#189 opened Jan 8, 2019 by bfrgoncalves
1
Merging inspect and report discussion enhancement New feature or request
#181 opened Dec 12, 2018 by jacarrico
@ODiogoSilva @bfrgoncalves
@tiagofilipe12 @cimendes
3
Merging syntax with new operator discussion enhancement New feature or request
#174 opened Nov 30, 2018 by bfrgoncalves
7
Secondary channel for long reads enhancement New feature or request
#157 opened Oct 22, 2018 by sjackman
11
unit tests for scripting templates discussion
#148 opened Oct 13, 2018 by tiagofilipe12
@ODiogoSilva @tiagofilipe12 @cimendes
2
ProTip! Exclude everything labeled bug with -label:bug.