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The Transcriptomic Age Prediction Tool

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The Transcriptomic Age Prediction Tool has been described in: 
Peters MJ, Joehanes R, Pilling LC, Conneely K, Powell J et al. The transcriptional landscape of age in human peripheral blood. Nature Communications. 2015 Oct 22;6:8570. DOI: 10.1038/ncomms9570 

TRAP Overview
=============

Trap presents the user a web interface to configure an analysis. A grid scheduler checks for
this configuration and runs it in sequence and results are copied to user directory and
made available via the web interface.

Trap uses:
httpd		- to present dashboard via web interface
mysqldb/mariadb - to store user information and job meta data
Sun Gridengine 	- to batch run analyses
R 		- to run actual analyses

Trap is programmed in SQL / R / HTML and PHP

The folder provide:
   backend - the R scripts, transcriptome data and analysis invokation shell scripts  
   sql     - database layouts for users, jobs for the web frontend
   www     - PHP web application code - web frontend 

In order to manually run: check the comments in the R scripts inside the backend directory (SCALED-PREDICTOR-XXXX.R)

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  • PHP 73.8%
  • R 12.4%
  • Perl 7.6%
  • CSS 3.7%
  • JavaScript 1.4%
  • Shell 1.1%