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@ay-lab ay-lab released this 03 Apr 08:44
· 147 commits to master since this release
4.1
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Learn about vigilant mode.

  1. Reference files such as fasta sequence (corresponding to the reference genome), mappability file, restriction fragment file, are made as optional parameters. User can proceed without specifying these parameters (keeping the entries blank in the configuration file). The output interaction file is of the same format as before, except that, without any such genome specific input files, those fields have 0 values.

  2. Minor fix in coverage computation (support for gzipped / plain text valid pairs file)

  3. Optional plotting of mappability, GC content, and RE sites, according to the parameter specifications.

  4. Updated configuration file.

  5. Updated README file.

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