Release v1.15.0

Release v1.15.0

New Feature:

• KBDEV-1136 change cancergene and cancerrelated field-names to cancerGeneListMatch and kbStatementRelated

What's Changed

• cancerGeneListMatch and kbStatementRelated flags by @mathieulemieux in #110
• lint noqa of flake8 errors in test_statement.py from pytest fixture. by @dustinbleile in #112
• Release/v1.15.0 kb statement related genes by @dustinbleile in #113

Full Changelog: v1.14.0...v1.15.0

Release v1.14.0

Feature:

• Add cancerGene flag to get_gene_information()

Release v1.13.0

Feature:

• Add get_cancer_genes()

Release v1.12.0

Feature:

• Add type screening and length threshold for structural variant matching
• Add dataset file reference for tests

Bugfix:

• Fix relevance filtering for cancer predisposition function

v1.11.0

Release v1.11.0

New Feature:

• GERO-337 - get_gene_information function added.
  Improvements:
• update docstrings and import orders

Release v1.10.2

Bugfix:

• match.py::match_positional_variant() using equivalent terms in lieu of whole tree for list of matching types

Release v1.10.1

Bugfix:

• Update GH workflow for PyPi publishing on released

Release v1.10.0

New feature:

• New utility functions to accomodate for positional variant comparison

Bugfix:

• fix match.py::match_positional_variant() not to use matched generic variants in 'similarTo' queries
• require install of requests<2.29.0 to avoid any errors with urllib

Release v1.9.1

Improvements

• Add support for GeneralizationOf edges in matching positional variants

Bugfix

• Fix mkdocs redirect mapping for matching directory

Release v1.9.0

What's Changed

• SDEV-3342 - add get_statements_from_variants function - adapted from … by @dustinbleile in #74
• Feature/sdev 3256 gene list updates pharma cancer predisp by @dustinbleile in #72
• Bugfix/GitHub actions timeouts by @elewis2 in #76
• Bugfix/GitHub actions timeouts turn tests on by @dustinbleile in #77
• Release/v1.9.0 test updates helper funcs by @dustinbleile in #78

New Contributors

• @elewis2 made their first contribution in #76

Full Changelog: v1.8.0...v1.9.0

Release v1.9.0
New Features:

• get_statements_from_variants - helper function added.
• get_term_list - helper function added.
• get_rid - helper function added.
• get_pharmacogenomic_info - helper function added.
• get_cancer_predisposition_info - helper function added.
• Added constants PHARMACOGENOMIC_RELEVANCE_TERMS and PHARMACOGENOMIC_SOURCE_EXCLUDE_LIST
  Bugfix:
• Ignore gene name version in get_equivalent_features. Eg. NM_033360.4 should match 'NM_033360' and 'KRAS'.
  Improvements:
• get_preferred_gene_name - moved to genes.py
• move CHOMOSOMES and PREFERRED_GENE_SOURCE to constants.py
• add retries on connection failure
  added tests:
• test_get_pharmacogenomic_info
• test_get_cancer_predisposition_info
• reduced runtime of longest test
• add match test