Merge pull request #181 from bigbio/dev #314
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| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Continuous integration Unit tests | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| PythonBlack: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| # Set up the specific Python version for Black | |
| - name: Set up Python 3.12 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.12 # Set your desired Python version here | |
| # Install Black and dependencies if necessary | |
| - name: Install Black | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install black | |
| # Run Black linting | |
| - name: Check code lints with Black | |
| run: black . --check | |
| # If the above check failed, post a comment on the PR explaining the failure | |
| - name: Post PR comment | |
| if: failure() | |
| uses: mshick/add-pr-comment@v1 | |
| with: | |
| message: | | |
| ## Python linting (`black`) is failing | |
| To keep the code consistent with lots of contributors, we run automated code consistency checks. | |
| To fix this CI test, please run: | |
| * Install [`black`](https://black.readthedocs.io/en/stable/): `pip install black` | |
| * Fix formatting errors in your pipeline: `black .` | |
| Once you push these changes the test should pass, and you can hide this comment :+1: | |
| We highly recommend setting up Black in your code editor so that this formatting is done automatically on save. Ask about it on Slack for help! | |
| Thanks again for your contribution! | |
| repo-token: ${{ secrets.GITHUB_TOKEN }} | |
| allow-repeats: false | |
| isort: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out source-code repository | |
| uses: actions/checkout@v2 | |
| - name: Set up Python 3.8 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.8 | |
| - name: python-isort | |
| uses: isort/isort-action@v0.1.0 | |
| with: | |
| isortVersion: "latest" | |
| requirementsFiles: "requirements.txt requirements-dev.txt" | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python 3.8 | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.8 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt -r requirements-dev.txt | |
| - name: Install package | |
| run: python setup.py install | |
| - name: Test OpenMS converter | |
| run: | | |
| python -m pytest tests |