Skip to content

Issues: bigbio/sdrf-pipelines

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

25 Open 48 Closed
25 Open 48 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

remove the steup.py and goes completely in poetry build
#185 opened Nov 21, 2024 by ypriverol
@ypriverol
Add optional MS-based column comment["quantitation level"] for different TMT designs?
#184 opened Nov 5, 2024 by jpfeuffer
@ypriverol @daichengxin
1
Allow missing/NA-filled columns for sdrf2openms conversion enhancement New feature or request
#173 opened Sep 23, 2024 by jpfeuffer
3
Validation fails with some repeated columns bug Something isn't working
#172 opened Aug 6, 2024 by ypriverol
@ypriverol
1
Proposal for refactoring & higher maintainability documentation Improvements or additions to documentation enhancement New feature or request question Further information is requested
#159 opened Jan 29, 2024 by di-hardt
@ypriverol
6
Free text validation
#158 opened Jan 29, 2024 by TineClaeys
@ypriverol
1
sdrf pipelines version 0.0.25 high-priority
#156 opened Jan 8, 2024 by ypriverol
2 of 5 tasks
@ypriverol
Validate file duplications if not multiplexing is available bug Something isn't working high-priority
#155 opened Dec 14, 2023 by ypriverol
@ypriverol
Validator option for the different flavors
#154 opened Dec 8, 2023 by jpfeuffer
@MaLLLiYA
The empty cells validation is not good
#153 opened Dec 8, 2023 by ypriverol
1
Problems understanding TMT label in sdrf file
#152 opened Dec 1, 2023 by MetteBoge
Erroneous TMT label extraction logic
#139 opened Aug 26, 2022 by fabianegli
[BUG] using unassigned variable in except block after failed assignment in try
#121 opened May 2, 2022 by fabianegli
1
1
[ENH] Empty rows in the middle of the dataset are erroneously accepted
#115 opened Apr 5, 2022 by fabianegli
[MAINT] ignore formatting commits in blame
#114 opened Apr 5, 2022 by fabianegli
@fabianegli
1
[DISCUSSION] A more concise CLI that is well behaved help wanted Extra attention is needed question Further information is requested
#113 opened Apr 5, 2022 by fabianegli
[ENH] Need for more comprehensive integration testing enhancement New feature or request help wanted Extra attention is needed high-priority
#112 opened Apr 4, 2022 by fabianegli
@ypriverol @fabianegli @qinchunyuan
4
[DISCUSSION] Permissive or strict parser? help wanted Extra attention is needed question Further information is requested
#111 opened Apr 4, 2022 by fabianegli
[DOC] Link to relevant repos help wanted Extra attention is needed high-priority question Further information is requested
#109 opened Apr 4, 2022 by fabianegli
@fabianegli
3
[ENH] Consistent API input checks with useful feedback on failure enhancement New feature or request
#108 opened Apr 4, 2022 by fabianegli
[MAINT] Favor pathlib over path string manipulation good first issue Good for newcomers high-priority
#107 opened Apr 4, 2022 by fabianegli
@fabianegli
1
[ENH] Using some Python coding best practices for open source repositories enhancement New feature or request help wanted Extra attention is needed
#105 opened Apr 4, 2022 by fabianegli
5
[Feature request] Make parsed SDRF data usable
#104 opened Apr 4, 2022 by fabianegli
[CI/CD] Should't tests be run before a package is published?
#103 opened Apr 4, 2022 by fabianegli
[DOC] Document how to run tests high-priority
#102 opened Apr 4, 2022 by fabianegli
@fabianegli
2
ProTip! Exclude everything labeled bug with -label:bug.