Merge pull request #455 from fnothaft/add-serializers

[ADAM-454] Add serializers for Avro objects which don't have serializers
bigdatagenomics · Nov 3, 2014 · 824daa8 · 824daa8
2 parents 0226b4f + 7e35aa8
commit 824daa8
Showing 1 changed file with 6 additions and 0 deletions.
diff --git a/adam-core/src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala b/adam-core/src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
@@ -73,6 +73,12 @@ class ADAMKryoRegistrator extends KryoRegistrator {
     kryo.register(classOf[FlatGenotype], new AvroSerializer[FlatGenotype]())
     kryo.register(classOf[DatabaseVariantAnnotation], new AvroSerializer[DatabaseVariantAnnotation]())
     kryo.register(classOf[NucleotideContigFragment], new AvroSerializer[NucleotideContigFragment]())
+    kryo.register(classOf[Contig], new AvroSerializer[Contig]())
+    kryo.register(classOf[StructuralVariant], new AvroSerializer[StructuralVariant]())
+    kryo.register(classOf[VariantCallingAnnotations], new AvroSerializer[VariantCallingAnnotations]())
+    kryo.register(classOf[VariantEffect], new AvroSerializer[VariantEffect]())
+    kryo.register(classOf[DatabaseVariantAnnotation], new AvroSerializer[DatabaseVariantAnnotation]())
+    kryo.register(classOf[Dbxref], new AvroSerializer[Dbxref]())
     kryo.register(classOf[Feature], new AvroSerializer[Feature]())
     kryo.register(classOf[ReferencePositionWithOrientation], new ReferencePositionWithOrientationSerializer)
     kryo.register(classOf[ReferencePosition], new ReferencePositionSerializer)