updated python/R tests for optSampleId

bigdatagenomics · Nov 12, 2018 · 87bd373 · 87bd373
1 parent 04b56cc
commit 87bd373
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/adam-python/bdgenomics/adam/test/alignmentRecordRdd_test.py b/adam-python/bdgenomics/adam/test/alignmentRecordRdd_test.py
@@ -136,7 +136,7 @@ def test_transmute_to_coverage(self):
  x.start,
  x.end,
  x.mapq.cast(DoubleType()).alias("count"),
- x.recordGroupSample.alias("sampleId")),
+ x.recordGroupSample.alias("optSampleId")),
  CoverageRDD)
 
  assert(isinstance(readsAsCoverage, CoverageRDD))

diff --git a/adam-r/bdgenomics.adam/tests/testthat/test_alignmentRecordRdd.R b/adam-r/bdgenomics.adam/tests/testthat/test_alignmentRecordRdd.R
@@ -100,7 +100,7 @@ test_that("transmute to coverage", {
  reads <- loadAlignments(ac, readsPath)
 
  readsAsCoverage = transmute(reads, function(df) {
- select(df, df$contigName, df$start, df$end, alias(cast(df$mapq, "double"), "count"), alias(cast(df$recordGroupSample, "string"), "sampleId"))
+ select(df, df$contigName, df$start, df$end, alias(cast(df$mapq, "double"), "count"), alias(cast(df$recordGroupSample, "string"), "optSampleId"))
  }, "CoverageRDD")
 
  expect_true(is(readsAsCoverage, "CoverageRDD"))