add supplementaryAlignment to AlignmentRecordField

bigdatagenomics · Nov 3, 2014 · 90de3fe · 90de3fe
1 parent fb67b86
commit 90de3fe
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/adam-core/src/main/scala/org/bdgenomics/adam/projections/AlignmentRecordField.scala b/adam-core/src/main/scala/org/bdgenomics/adam/projections/AlignmentRecordField.scala
@@ -28,5 +28,5 @@ import org.bdgenomics.formats.avro.AlignmentRecord
  */
 object AlignmentRecordField extends FieldEnumeration(AlignmentRecord.SCHEMA$) {
 
- val contig, start, end, mapq, readName, sequence, mateAlignmentStart, cigar, qual, recordGroupId, recordGroupName, readPaired, properPair, readMapped, mateMapped, readNegativeStrand, mateNegativeStrand, firstOfPair, secondOfPair, primaryAlignment, failedVendorQualityChecks, duplicateRead, mismatchingPositions, attributes, recordGroupSequencingCenter, recordGroupDescription, recordGroupRunDateEpoch, recordGroupFlowOrder, recordGroupKeySequence, recordGroupLibrary, recordGroupPredictedMedianInsertSize, recordGroupPlatform, recordGroupPlatformUnit, recordGroupSample, mateContig, origQual = SchemaValue
+ val contig, start, end, mapq, readName, sequence, mateAlignmentStart, cigar, qual, recordGroupId, recordGroupName, readPaired, properPair, readMapped, mateMapped, readNegativeStrand, mateNegativeStrand, firstOfPair, secondOfPair, primaryAlignment, failedVendorQualityChecks, duplicateRead, mismatchingPositions, attributes, recordGroupSequencingCenter, recordGroupDescription, recordGroupRunDateEpoch, recordGroupFlowOrder, recordGroupKeySequence, recordGroupLibrary, recordGroupPredictedMedianInsertSize, recordGroupPlatform, recordGroupPlatformUnit, recordGroupSample, mateContig, origQual, supplmentaryAlignment = SchemaValue
 }