Rename recalibateBaseQualities method as recalibrateBaseQualities

bigdatagenomics · Mar 31, 2017 · a70c371 · a70c371
1 parent 462db97
commit a70c371
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala b/adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
@@ -247,7 +247,7 @@ class Transform(protected val args: TransformArgs) extends BDGSparkCommand[Trans
       }
 
       // run bqsr
-      val bqsredRdd = rdd.recalibateBaseQualities(
+      val bqsredRdd = rdd.recalibrateBaseQualities(
         broadcastedSnps,
         args.minAcceptableQuality,
         optSl

diff --git a/adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala b/adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
@@ -638,7 +638,7 @@ case class AlignmentRecordRDD(
    *   of the first stage of BQSR. Defaults to StorageLevel.MEMORY_ONLY.
    * @return Returns an RDD of recalibrated reads.
    */
-  def recalibateBaseQualities(
+  def recalibrateBaseQualities(
     knownSnps: Broadcast[SnpTable],
     minAcceptableQuality: Int = 5,
     optStorageLevel: Option[StorageLevel] = Some(StorageLevel.MEMORY_ONLY)): AlignmentRecordRDD = BQSRInDriver.time {