Update spark dependency version to 3.3.4, and other dependency updates.

bigdatagenomics · Dec 30, 2023 · a780482 · a780482
1 parent d06712e
commit a780482
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Showing 4 changed files with 13 additions and 13 deletions.
diff --git a/adam-apis/pom.xml b/adam-apis/pom.xml
@@ -123,7 +123,7 @@
     </dependency>
     <dependency>
       <groupId>org.slf4j</groupId>
-      <artifactId>slf4j-log4j12</artifactId>
+      <artifactId>slf4j-reload4j</artifactId>
       <scope>test</scope>
     </dependency>
     <dependency>

diff --git a/adam-cli/pom.xml b/adam-cli/pom.xml
@@ -171,7 +171,7 @@
     </dependency>
     <dependency>
       <groupId>org.slf4j</groupId>
-      <artifactId>slf4j-log4j12</artifactId>
+      <artifactId>slf4j-reload4j</artifactId>
       <scope>test</scope>
     </dependency>
     <dependency>

diff --git a/adam-core/pom.xml b/adam-core/pom.xml
@@ -234,7 +234,7 @@
     </dependency>
     <dependency>
       <groupId>org.slf4j</groupId>
-      <artifactId>slf4j-log4j12</artifactId>
+      <artifactId>slf4j-reload4j</artifactId>
       <scope>test</scope>
     </dependency>
     <dependency>

diff --git a/pom.xml b/pom.xml
@@ -19,12 +19,12 @@
   <properties>
     <java.version>1.8</java.version>
     <avro.version>1.11.3</avro.version>
-    <scala.version>2.12.17</scala.version>
+    <scala.version>2.12.18</scala.version>
     <scala.version.prefix>2.12</scala.version.prefix>
-    <spark.version>3.3.3</spark.version>
+    <spark.version>3.3.4</spark.version>
     <parquet.version>1.12.3</parquet.version>
     <hadoop-bam.version>7.10.0</hadoop-bam.version>
-    <slf4j.version>1.7.30</slf4j.version>
+    <slf4j.version>1.7.36</slf4j.version>
     <bdg-formats.version>1.0.1</bdg-formats.version>
     <bdg-utils.version>1.0</bdg-utils.version>
     <grizzled-slf4j.version>1.3.4</grizzled-slf4j.version>
@@ -330,17 +330,17 @@
       <dependency>
         <groupId>commons-io</groupId>
         <artifactId>commons-io</artifactId>
-        <version>2.11.0</version>
+        <version>2.15.1</version>
       </dependency>
       <dependency>
         <groupId>org.apache.commons</groupId>
         <artifactId>commons-lang3</artifactId>
-        <version>3.12.0</version>
+        <version>3.14.0</version>
       </dependency>
       <dependency>
         <groupId>it.unimi.dsi</groupId>
         <artifactId>fastutil</artifactId>
-        <version>8.5.11</version>
+        <version>8.5.12</version>
       </dependency>
       <dependency>
         <groupId>org.scala-lang</groupId>
@@ -458,7 +458,7 @@
       <dependency>
         <artifactId>commons-codec</artifactId>
         <groupId>commons-codec</groupId>
-        <version>1.15</version>
+        <version>1.16.0</version>
       </dependency>
       <dependency>
         <groupId>org.apache.parquet</groupId>
@@ -518,7 +518,7 @@
       </dependency>
       <dependency>
         <groupId>org.slf4j</groupId>
-        <artifactId>slf4j-log4j12</artifactId>
+        <artifactId>slf4j-reload4j</artifactId>
         <version>${slf4j.version}</version>
       </dependency>
       <dependency>
@@ -529,12 +529,12 @@
      <dependency>
         <groupId>com.google.guava</groupId>
         <artifactId>guava</artifactId>
-        <version>32.0.0-jre</version>
+        <version>33.0.0-jre</version>
       </dependency>
       <dependency>
         <groupId>org.mockito</groupId>
         <artifactId>mockito-core</artifactId>
-        <version>5.1.1</version>
+        <version>5.8.0</version>
         <scope>test</scope>
       </dependency>
       <dependency>