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Note this will require bumping the dependency version of Hadoop-BAM to 7.5.1 (or 7.6.0) which may bring along a transitive dependency version bump of htsjdk to 2.5.0, see HadoopGenomics/Hadoop-BAM#107.
The text was updated successfully, but these errors were encountered:
Remove the workaround here
https://github.com/bigdatagenomics/adam/blob/master/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala#L159
for gzip/BGZF compressed VCF headers. The issue has been fixed upstream
Fix VCFHeaderReader for gzipped and BGZF VCF formats
HadoopGenomics/Hadoop-BAM#97
Note this will require bumping the dependency version of Hadoop-BAM to 7.5.1 (or 7.6.0) which may bring along a transitive dependency version bump of htsjdk to 2.5.0, see HadoopGenomics/Hadoop-BAM#107.
The text was updated successfully, but these errors were encountered: