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R language package for Adam #882

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chanwit opened this issue Nov 12, 2015 · 2 comments
Closed

R language package for Adam #882

chanwit opened this issue Nov 12, 2015 · 2 comments
Milestone
0.23.0

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@chanwit
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chanwit commented Nov 12, 2015

Hi,

I've successfully created a simple R package AdamR similar to SparkR in the Spark project.
It's been working greatly enough for me to do countKmers and turn its result into a local R dataset.

How could I contribute this package? Does it fit into this project?
@heuermh
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heuermh commented Nov 12, 2015

Very cool!

Easiest would be a pull request against this repo and then everyone could evaluate where it best fits.

If you would like to contribute to bigdatagenomics repositories, and haven't yet, you may want to fill out a contributor license agreement.

@fnothaft
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Just pinged @chanwit; he's working on licensing with his institution. We'll watch this ticket!

@fnothaft fnothaft mentioned this issue Feb 21, 2017
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@fnothaft fnothaft added this to the 0.23.0 milestone Mar 3, 2017
fnothaft added a commit to fnothaft/adam that referenced this issue Jun 26, 2017
@fnothaft
[ADAM-882] Add R API.
7490871 
Resolves bigdatagenomics#882. Adds an R API that binds around the ADAM GenomicRDD APIs.
Supports Spark 2.x and onwards, as accessible SparkR functionality for binding
to Java libraries was added in Spark 2.0.0.
fnothaft added a commit to fnothaft/adam that referenced this issue Jun 26, 2017
@fnothaft
[ADAM-882] Add R API.
8857833 
Resolves bigdatagenomics#882. Adds an R API that binds around the ADAM GenomicRDD APIs.
Supports Spark 2.x and onwards, as accessible SparkR functionality for binding
to Java libraries was added in Spark 2.0.0.
fnothaft added a commit to fnothaft/adam that referenced this issue Jun 27, 2017
@fnothaft
[ADAM-882] Add R API.
dea5fa0 
Resolves bigdatagenomics#882. Adds an R API that binds around the ADAM GenomicRDD APIs.
Supports Spark 2.x and onwards, as accessible SparkR functionality for binding
to Java libraries was added in Spark 2.0.0.
fnothaft added a commit to fnothaft/adam that referenced this issue Jul 11, 2017
@fnothaft
[ADAM-882] Add R API.
004b1de 
Resolves bigdatagenomics#882. Adds an R API that binds around the ADAM GenomicRDD APIs.
Supports Spark 2.x and onwards, as accessible SparkR functionality for binding
to Java libraries was added in Spark 2.0.0.
fnothaft added a commit to fnothaft/adam that referenced this issue Jul 19, 2017
@fnothaft
[ADAM-882] Add R API.
abcf028 
Resolves bigdatagenomics#882. Adds an R API that binds around the ADAM GenomicRDD APIs.
Supports Spark 2.x and onwards, as accessible SparkR functionality for binding
to Java libraries was added in Spark 2.0.0.
fnothaft added a commit to fnothaft/adam that referenced this issue Jul 21, 2017
@fnothaft
[ADAM-882] Add R API.
d3975ba 
Resolves bigdatagenomics#882. Adds an R API that binds around the ADAM GenomicRDD APIs.
Supports Spark 2.x and onwards, as accessible SparkR functionality for binding
to Java libraries was added in Spark 2.0.0.
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@chanwit @heuermh @fnothaft