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[ADAM-1486] Respect validation stringency if BAM header load fails. #1525

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fnothaft
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Resolves #1486.

@fnothaft fnothaft assigned fnothaft and unassigned fnothaft May 12, 2017
@fnothaft fnothaft added this to the 0.23.0 milestone May 12, 2017
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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1998/

Build result: FAILURE

[...truncated 16 lines...] > /home/jenkins/git2/bin/git rev-parse origin/pr/1525/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a --contains b24b42ea4e2bb964cc9bc2467d27c04766d88a6d # timeout=10 > /home/jenkins/git2/bin/git rev-parse remotes/origin/pr/1525/merge^{commit} # timeout=10Checking out Revision b24b42ea4e2bb964cc9bc2467d27c04766d88a6d (origin/pr/1525/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f b24b42ea4e2bb964cc9bc2467d27c04766d88a6dFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.3.0,2.11,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.10,1.6.1,centosTriggering ADAM-prb ? 2.3.0,2.11,2.0.0,centosTriggering ADAM-prb ? 2.3.0,2.10,2.0.0,centosTriggering ADAM-prb ? 2.6.0,2.11,2.0.0,centosTriggering ADAM-prb ? 2.6.0,2.10,2.0.0,centosTriggering ADAM-prb ? 2.3.0,2.10,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.11,1.6.1,centosADAM-prb ? 2.3.0,2.11,1.6.1,centos completed with result FAILUREADAM-prb ? 2.6.0,2.10,1.6.1,centos completed with result FAILUREADAM-prb ? 2.3.0,2.11,2.0.0,centos completed with result FAILUREADAM-prb ? 2.3.0,2.10,2.0.0,centos completed with result FAILUREADAM-prb ? 2.6.0,2.11,2.0.0,centos completed with result FAILUREADAM-prb ? 2.6.0,2.10,2.0.0,centos completed with result FAILUREADAM-prb ? 2.3.0,2.10,1.6.1,centos completed with result FAILUREADAM-prb ? 2.6.0,2.11,1.6.1,centos completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

@fnothaft fnothaft force-pushed the issues/1486-bam-header-load-error branch from bbc8638 to 94e8bd6 Compare May 12, 2017 21:25
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Helps to include the new test file...

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coveralls commented May 12, 2017

Coverage Status

Coverage remained the same at 82.015% when pulling 94e8bd6 on fnothaft:issues/1486-bam-header-load-error into 18191f9 on bigdatagenomics:master.

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Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2000/
Test PASSed.

@heuermh heuermh merged commit 7fc5b4f into bigdatagenomics:master May 16, 2017
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heuermh commented May 16, 2017

Thank you, @fnothaft!

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4 participants