Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[ADAM-1709] Add ability to left normalize reads containing INDELs. #1711

Merged

Conversation

fnothaft
Copy link
Member

@fnothaft fnothaft commented Sep 6, 2017

Resolves #1709. Opens protection on main method in NormalizationUtils to be package-private to org.bdgenomics.adam. Adds code to AlignmentRecordRDD exposing INDEL normalization as a transformation.

Resolves bigdatagenomics#1709. Opens protection on main method in NormalizationUtils to be
package-private to org.bdgenomics.adam. Adds code to AlignmentRecordRDD
exposing INDEL normalization as a transformation.
@fnothaft fnothaft added this to the 0.23.0 milestone Sep 6, 2017
@coveralls
Copy link

coveralls commented Sep 6, 2017

Coverage Status

Coverage increased (+0.08%) to 83.548% when pulling 8fcb03f on fnothaft:issues/1709-left-normalize-indels into 51efbaf on bigdatagenomics:master.

@AmplabJenkins
Copy link

Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/2354/
Test PASSed.

@heuermh heuermh merged commit 28bbb48 into bigdatagenomics:master Sep 6, 2017
@heuermh
Copy link
Member

heuermh commented Sep 6, 2017

Thank you, @fnothaft

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

4 participants