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Added Filter error when file loaded does not match schema #1805

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merged 1 commit into from
Nov 18, 2017
Merged

Added Filter error when file loaded does not match schema #1805

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15 changes: 13 additions & 2 deletions adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
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Original file line number Diff line number Diff line change
Expand Up @@ -1344,15 +1344,26 @@ class ADAMContext(@transient val sc: SparkContext) extends Serializable with Log

// elaborate out the path; this returns FileStatuses
val paths = if (fs.isDirectory(path)) {
val paths = fs.listStatus(path)

if (paths == null || paths.isEmpty) {
s"Couldn't find any files matching ${path.toUri}"
}
fs.listStatus(path, filter)
} else {
val paths = fs.globStatus(path)
if (paths == null || paths.isEmpty) {
throw new FileNotFoundException(
s"Couldn't find any files matching ${path.toUri}"
)
}
fs.globStatus(path, filter)
}

// the path must match at least one file
// the path must match PathFilter
if (paths == null || paths.isEmpty) {
throw new FileNotFoundException(
s"Couldn't find any files matching ${path.toUri}"
s"Couldn't find any files matching ${path.toUri} for the requested PathFilter"
)
}

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