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Add FASTA in formatter for sequence datasets #2207

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merged 1 commit into from
Sep 12, 2019

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@heuermh heuermh commented Sep 12, 2019

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@heuermh heuermh added this to the 0.29.0 milestone Sep 12, 2019
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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/3054/

Build result: FAILURE

[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2207/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains 40fae63 # timeout=10Checking out Revision 40fae63 (origin/pr/2207/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 40fae6347936343c8cc7c91d335f510b28b627caFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.7.5,2.11,2.4.4,ubuntuTriggering ADAM-prb ? 2.7.5,2.12,2.4.4,ubuntuADAM-prb ? 2.7.5,2.11,2.4.4,ubuntu completed with result FAILUREADAM-prb ? 2.7.5,2.12,2.4.4,ubuntu completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/3055/
Test PASSed.

@heuermh heuermh merged commit f02a1de into bigdatagenomics:master Sep 12, 2019
@heuermh heuermh deleted the fasta-in-formatter branch September 12, 2019 15:53
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