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Rename AlignmentRecord to Alignment. #2217

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merged 1 commit into from
Oct 1, 2019

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heuermh
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@heuermh heuermh commented Sep 27, 2019

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/3063/

Build result: FAILURE

[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2217/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains df20948 # timeout=10Checking out Revision df20948 (origin/pr/2217/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f df2094885748352418a15759a741ea9938cc9a17First time build. Skipping changelog.Triggering ADAM-prb ? 2.7.5,2.11,2.4.4,ubuntuTriggering ADAM-prb ? 2.7.5,2.12,2.4.4,ubuntuADAM-prb ? 2.7.5,2.11,2.4.4,ubuntu completed with result FAILUREADAM-prb ? 2.7.5,2.12,2.4.4,ubuntu completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

@heuermh
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heuermh commented Sep 27, 2019

Requires bigdatagenomics/bdg-formats#188 to be merged and a snapshot deployed.

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/3064/

Build result: FAILURE

[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2217/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains 650454e # timeout=10Checking out Revision 650454e (origin/pr/2217/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 650454e2ac153ec33c194c1d5ea132895d91dd5cFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.7.5,2.11,2.4.4,ubuntuTriggering ADAM-prb ? 2.7.5,2.12,2.4.4,ubuntuADAM-prb ? 2.7.5,2.11,2.4.4,ubuntu completed with result FAILUREADAM-prb ? 2.7.5,2.12,2.4.4,ubuntu completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'
Test FAILed.

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heuermh commented Oct 1, 2019

Jenkins, retest this please

@heuermh heuermh added this to the 0.30.0 milestone Oct 1, 2019
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Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/3065/
Test PASSed.

@heuermh heuermh merged commit dd99cad into bigdatagenomics:master Oct 1, 2019
@heuermh heuermh deleted the alignments branch October 1, 2019 23:21
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