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Added AdamContext.referenceLengthFromCigar #263

Merged
merged 1 commit into from
Jun 9, 2014
Merged

Added AdamContext.referenceLengthFromCigar #263

merged 1 commit into from
Jun 9, 2014

Commits on Jun 9, 2014

  1. Adding RichADAMRecord.referenceLengthFromCigar 

    The new referenceLengthFromCigar method (and its associated ADAMRecord method, 'referenceLength')
is an implementation of a method which counts the length of an aligned read against the reference
sequence. This is useful because rec.start + rec.referenceLength is a logical "end" coordinate
to be used for testing overlap of an ADAMRecord against a reference range.
    @tdanford
    tdanford committed Jun 9, 2014
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