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Fixes for indel realigner issues #427

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merged 4 commits into from
Oct 21, 2014
Merged

Fixes for indel realigner issues #427

merged 4 commits into from
Oct 21, 2014

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fnothaft
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This fixes #423, #424, #425, and #426, two of which were reported by @jstjohn.

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Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/308/
Test PASSed.

massie added a commit that referenced this pull request Oct 21, 2014
@massie
Merge pull request #427 from fnothaft/indel-realigner-errors
9bd74c8 
Fixes for indel realigner issues
@massie massie merged commit 9bd74c8 into bigdatagenomics:master Oct 21, 2014
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massie commented Oct 21, 2014

Thanks, Frank!

This was referenced Mar 1, 2015
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Successfully merging this pull request may close these issues.

Conversion to SAM throws error due to Avro UTF8 string being passed
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@fnothaft @AmplabJenkins @massie