don't open non-.adam-extension files as ADAM files

[ryan-williams]

No description provided.

[fnothaft]

+1, LGTM! I'll keep it open for a bit in case anyone else wants to comment.

[AmplabJenkins]

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/493/

Build result: FAILURE

GitHub pull request #523 of commit cb56e3a automatically merged.[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/523/merge^{commit} # timeout=10Checking out Revision 95d2a4b (detached) > git config core.sparsecheckout # timeout=10 > git checkout -f 95d2a4b > git rev-list b750165 # timeout=10Triggering ADAM-prb ? 2.3.0,centosTriggering ADAM-prb ? 2.2.0,centosTriggering ADAM-prb ? 1.0.4,centosADAM-prb ? 2.3.0,centos completed with result FAILUREADAM-prb ? 2.2.0,centos completed with result FAILUREADAM-prb ? 1.0.4,centos completed with result FAILURE
Test FAILed.

[shaneknapp]

jenkins, test this please

[AmplabJenkins]

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/494/

Build result: FAILURE

GitHub pull request #523 of commit cb56e3a automatically merged.[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/523/merge^{commit} # timeout=10Checking out Revision 95d2a4b (detached) > git config core.sparsecheckout # timeout=10 > git checkout -f 95d2a4b > git rev-list b750165 # timeout=10Triggering ADAM-prb ? 2.3.0,centosTriggering ADAM-prb ? 2.2.0,centosTriggering ADAM-prb ? 1.0.4,centosADAM-prb ? 2.3.0,centos completed with result FAILUREADAM-prb ? 2.2.0,centos completed with result FAILUREADAM-prb ? 1.0.4,centos completed with result FAILURE
Test FAILed.

[ryan-williams]

I believe my last commit should fix jenkins, which was failing due to needing some .adam extensions in the jenkins-test script

[AmplabJenkins]

Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/495/
Test PASSed.

[fnothaft]

@ryan-williams can you squash this down? I will merge once squashed.

[ryan-williams]

done!

[AmplabJenkins]

Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/499/
Test PASSed.

[fnothaft]

Merged! Thanks @ryan-williams!