[ADAM-625] Enable globbing for BAM. #626
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
|
Test FAILed. Build result: FAILUREGitHub pull request #626 of commit d48f1f1 automatically merged.Notifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'[EnvInject] - Loading node environment variables.Building remotely on amp-jenkins-worker-05 (centos) in workspace /home/jenkins/workspace/ADAM-prb > git rev-parse --is-inside-work-tree # timeout=10Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ > git rev-parse origin/pr/626/merge^{commit} # timeout=10 > git branch -a --contains fd8f6a82ffc71c3b3d6b69977cb220f55a5e9b29 # timeout=10 > git rev-parse remotes/origin/pr/626/merge^{commit} # timeout=10Checking out Revision fd8f6a82ffc71c3b3d6b69977cb220f55a5e9b29 (origin/pr/626/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f fd8f6a82ffc71c3b3d6b69977cb220f55a5e9b29First time build. Skipping changelog.Triggering ADAM-prb ? 2.2.0,centosTriggering ADAM-prb ? 2.3.0,centosTriggering ADAM-prb ? 1.0.4,centosADAM-prb ? 2.2.0,centos completed with result FAILUREADAM-prb ? 2.3.0,centos completed with result FAILUREADAM-prb ? 1.0.4,centos completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'Test FAILed. |
| @Args4jOption(required = false, name = "-force_load_fastq", usage = "Forces Transform to load from unpaired FASTQ.") | ||
| var forceLoadFastq: Boolean = false | ||
| @Args4jOption(required = false, name = "-force_load_fastq", usage = "Forces Transform to load from interleaved FASTQ.") | ||
| var forceLoadIFastq: Boolean = false |
There was a problem hiding this comment.
did you mean fasta? or just one extra cmd+p?
There was a problem hiding this comment.
There was a missing i --> interleaved; I had fixed it locally but forgot to commit before pushing.
|
lgtm after the build is fixed |
|
Test PASSed. |
|
Thanks, Frank! |
massie
added a commit
that referenced
this pull request
Mar 24, 2015
[ADAM-625] Enable globbing for BAM.
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Resolves #625. Elaborates the glob before loading the header.