Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

P Operator parsing for MDTag #875

Merged
merged 1 commit into from
Nov 3, 2015

Conversation

arahuja
Copy link
Contributor

@arahuja arahuja commented Oct 31, 2015

No description provided.

@AmplabJenkins
Copy link

Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins/job/ADAM-prb/1009/
Test PASSed.

@fnothaft
Copy link
Member

fnothaft commented Nov 1, 2015

LGTM! OOC, how are you getting a P in the middle of a CIGAR? (Or, was that just a unit test case?)

@heuermh heuermh added this to the 0.18.2 milestone Nov 2, 2015
@heuermh
Copy link
Member

heuermh commented Nov 2, 2015

We should be able to get a version 0.18.2 release out shortly with this in it, if that helps.

@arahuja
Copy link
Contributor Author

arahuja commented Nov 3, 2015

@fnothaft @heuermh Yes, it was just a unit test that had this issue for us - is a P unexpected in the middle of a CIGAR? I did a quick look through a handful of BAMs I had honestly did not find any P's and have run other ADAM utilities without this cropping up, so I'm not sure I've ever seen a CIGAR P in real data.

@fnothaft
Copy link
Member

fnothaft commented Nov 3, 2015

OK! Cool. I was just curious. Let me merge this now...

@fnothaft fnothaft merged commit bc38a1c into bigdatagenomics:master Nov 3, 2015
@fnothaft
Copy link
Member

fnothaft commented Nov 3, 2015

Thanks @arahuja!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

4 participants