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Add SNAP aligner #65

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fnothaft opened this issue Aug 20, 2017 · 2 comments · Fixed by #231
Closed

Add SNAP aligner #65

fnothaft opened this issue Aug 20, 2017 · 2 comments · Fixed by #231
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@fnothaft
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0.5.0

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@fnothaft
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And deprecate https://github.com/bigdatagenomics/snappea.
@heuermh
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heuermh commented Aug 22, 2017

+1

I found

https://github.com/fnothaft/toil-bdg/blob/issues/15-benchmarking-pipelines/src/toil_bdg/benchmarking/single_node/align_and_call.py#L224

https://github.com/fnothaft/toil-bdg/blob/issues/15-benchmarking-pipelines/src/toil_bdg/benchmarking/single_node/align_and_call.py#L90

and

fnothaft/toil-lib@1a7d937#diff-5f383740058d844c84c0fbbf10901c0eR241

and

fnothaft/toil-lib@b177411#diff-1e5f285554ea7f1b142b46addb894d5eR69

I'm not sure how all the branches relate though, so I'm not able to follow along at home.

@fnothaft fnothaft self-assigned this Aug 29, 2017
@fnothaft fnothaft added this to the 0.1.0 milestone Aug 29, 2017
fnothaft added a commit to fnothaft/cannoli-1 that referenced this issue Aug 29, 2017
@fnothaft
[CANNOLI-65] Add support for Snap.
2b5010c 
Resolves bigdatagenomics#65.
fnothaft added a commit to fnothaft/cannoli-1 that referenced this issue Aug 30, 2017
@fnothaft
[CANNOLI-65] Add support for Snap.
e5ba4f4 
Resolves bigdatagenomics#65.
This was referenced Aug 30, 2017
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@heuermh heuermh modified the milestones: 0.1.0, 0.2.0 Jan 24, 2018
@heuermh heuermh modified the milestones: 0.2.0, 0.3.0 Mar 22, 2018
@heuermh heuermh mentioned this issue Mar 23, 2018
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@heuermh heuermh removed this from the 0.3.0 milestone Nov 16, 2018
@heuermh heuermh added this to the 0.5.0 milestone May 23, 2019
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heuermh commented May 23, 2019

Closing as WontFix

@heuermh heuermh closed this as completed May 23, 2019
@heuermh heuermh reopened this Feb 19, 2020
@heuermh heuermh mentioned this issue Feb 19, 2020
Merged
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