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Update minimap2 container image to 2.27--he4a0461_1 #365

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Mar 20, 2024
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Update minimap2 container image to 2.27--he4a0461_1 #365

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fd032b0
Modifying changelog.
heuermh Jan 4, 2024
c1ec85e
Update minimap2 container image to 2.27--he4a0461_1.
heuermh Mar 20, 2024
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18 changes: 18 additions & 0 deletions CHANGES.md
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@@ -1,5 +1,23 @@
# Cannoli Changelog #

### Version 1.0.1 ###

**Closed issues:**

- Update Spark dependency version to 3.3.2 [\#357](https://github.com/bigdatagenomics/cannoli/issues/357)
- Update Spark dependency version to 3.3.1 [\#354](https://github.com/bigdatagenomics/cannoli/issues/354)
- Interest in multisample freebayes calling [\#352](https://github.com/bigdatagenomics/cannoli/issues/352)
- Update Spark dependency version to 3.3.0 [\#351](https://github.com/bigdatagenomics/cannoli/issues/351)

**Merged and closed pull requests:**

- Update ADAM dependency version to 1.0.1, Spark to 3.3.4, guava to 33.0.0-jre [\#363](https://github.com/bigdatagenomics/cannoli/pull/363) ([heuermh](https://github.com/heuermh))
- Update container images for blast, bowtie, bowtie2, freebayes, etc. [\#359](https://github.com/bigdatagenomics/cannoli/pull/359) ([heuermh](https://github.com/heuermh))
- Update Spark dependency version to 3.3.2 [\#358](https://github.com/bigdatagenomics/cannoli/pull/358) ([heuermh](https://github.com/heuermh))
- Update Spark dependency version to 3.3.1 [\#356](https://github.com/bigdatagenomics/cannoli/pull/356) ([heuermh](https://github.com/heuermh))
- Update bowtie2 container image to 2.5.0--py310h8d7afc0_0 [\#355](https://github.com/bigdatagenomics/cannoli/pull/355) ([heuermh](https://github.com/heuermh))


### Version 1.0 ###

**Closed issues:**
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4 changes: 2 additions & 2 deletions core/src/main/scala/org/bdgenomics/cannoli/Minimap2.scala
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Expand Up @@ -36,8 +36,8 @@ class Minimap2Args extends ReadGroupArgs {
@Args4jOption(required = false, name = "-executable", usage = "Path to the Minimap2 executable. Defaults to minimap2.")
var executable: String = "minimap2"

@Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/minimap2:2.25--h7132678_0.")
var image: String = "quay.io/biocontainers/minimap2:2.25--h7132678_0"
@Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/minimap2:2.27--he4a0461_1.")
var image: String = "quay.io/biocontainers/minimap2:2.27--he4a0461_1"

@Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
var sudo: Boolean = false
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