Added mango workflow #29
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| from toil_lib import require | ||
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| # all files must have s3 urls | ||
| def is_s3(f): |
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is_s3 → is_s3a, there is a difference
| @@ -0,0 +1,15 @@ | |||
| # Licensed to Big Data Genomics (BDG) under one | |||
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We're already in a repo called workflows, the _pipeline in the package name is redundant
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@heuermh do we want to rename all of them then?
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Eventually, I suppose. This repo hasn't quite fully graduated to bigdatagenomics status yet, with full pull request, review, merge by someone other than yourself, etc. process.
| def main(): | ||
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| parser = argparse.ArgumentParser() | ||
| parser.add_argument('--reference', help='Path to a file containing the S3 URL or local paths to the reference .2bit, fasta, or adam file.', |
| aws_access_key_id=None, | ||
| aws_secret_access_key=None): | ||
| """ | ||
| Invokes the Mango browsercontainer. Find mango at https://github.com/bigdatagenomics/mango. |
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browsercontainer → browser container
| aws_access_key_id=None, | ||
| aws_secret_access_key=None): | ||
| """ | ||
| Invokes the Mango browsercontainer. Find mango at https://github.com/bigdatagenomics/mango. |
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browsercontainer → browser container
| """ | ||
| Functions used across pipelines | ||
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| @author Alyssa Morrow |
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sorry, I don't believe we use @author tags ;)
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Hmm, I guess there are a few left over from toil-lib
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