fix tests

bihealth · Apr 30, 2024 · a383a63 · a383a63
1 parent ca3b76e
commit a383a63
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Showing 2 changed files with 6 additions and 5 deletions.
diff --git a/cubi_tk/snappy/itransfer_sv_calling.py b/cubi_tk/snappy/itransfer_sv_calling.py
@@ -45,7 +45,7 @@ def __init__(self, args):
                 f"Could not find any sv-calling step name in 'config.yaml'. Was looking for one of: {', '.join(self.__class__.step_names)}"
             )
 
-        if self.step_name == "sv-calling_targeted":
+        if self.step_name == "sv_calling_targeted":
             self.defined_callers = config["step_config"][self.step_name]["tools"]
         else:  # if self.step_name == 'sv-calling_wgs'
             # For WGS config looks like: sv-calling_wgs::tools::<dna>::[...]

diff --git a/tests/test_snappy_itransfer_sv_calling.py b/tests/test_snappy_itransfer_sv_calling.py
@@ -42,10 +42,11 @@ def fake_config(n_tools=1):
 
     tool2 = textwrap.dedent(
         r"""
-          sv_calling:
-            tools:
-              - gcnv
-              - manta
+          sv_calling_wgs:
+            dna:
+              tools:
+                - gcnv
+                - manta
         dummy_line
         """
     ).rstrip("dummy_line\n")