separate test

bioconda · Oct 12, 2024 · 46232cf · 46232cf
1 parent 56d6ed0
commit 46232cf
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Showing 2 changed files with 9 additions and 7 deletions.
diff --git a/recipes/vclust/meta.yaml b/recipes/vclust/meta.yaml
@@ -46,15 +46,9 @@ test:
     - example/*.*
     - example/output/*.*
   requires:
-    - pytest
+   # - pytest
   commands:
     - vclust.py --help
-    - vclust.py prefilter -i example/multifasta.fna -o tmp/filter.txt --batch-size 4 --k 18
-    - cmp tmp/filter.txt example/output/fltr.txt
-    - vclust.py align -i example/multifasta.fna -o tmp/ani.tsv
-    - cmp tmp/ani.tsv example/output/ani.tsv
-    - vclust.py cluster -i tmp/ani.tsv -o tmp/clusters.tsv --ids tmp/ani.ids.tsv --tani 0.95
-    - cmp tmp/clusters.tsv example/output/clusters.tsv
     #- pytest test.py                                        # [linux]
     #- pytest test.py -k 'not test_cluster_algorithm_leiden' # [osx]
 

diff --git a/recipes/vclust/run_test.sh b/recipes/vclust/run_test.sh
@@ -0,0 +1,8 @@
+# !/bin/bash
+
+vclust.py prefilter -i example/multifasta.fna -o tmp/filter.txt --batch-size 4 --k 18
+cmp tmp/filter.txt example/output/fltr.txt
+vclust.py align -i example/multifasta.fna -o tmp/ani.tsv
+cmp tmp/ani.tsv example/output/ani.tsv
+vclust.py cluster -i tmp/ani.tsv -o tmp/clusters.tsv --ids tmp/ani.ids.tsv --tani 0.95
+cmp tmp/clusters.tsv example/output/clusters.tsv