Add protestar #47764
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| #!/bin/bash | ||
| make protestar -j${CPU_COUNT} | ||
| install -d "${PREFIX}/bin" | ||
| install protestar "${PREFIX}/bin" | ||
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| {% set version = "1.1.0" %} | ||||||
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| package: | ||||||
| name: protestar | ||||||
| version: {{ version }} | ||||||
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| build: | ||||||
| number: 0 | ||||||
| run_exports: | ||||||
| - {{ pin_subpackage('protestar', max_pin='x.x.x') }} | ||||||
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| source: | ||||||
| git_url: https://github.com/refresh-bio/protestar.git | ||||||
| git_rev: v{{ version }} | ||||||
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| requirements: | ||||||
| build: | ||||||
| - {{ compiler('cxx') }} | ||||||
| - make | ||||||
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| test: | ||||||
| commands: | ||||||
| - protestar > /dev/null | ||||||
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| about: | ||||||
| home: https://github.com/refresh-bio/protestar | ||||||
| summary: "Protein Structures Archiver" | ||||||
| license: GPL-3 | ||||||
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Please use SPDX ids |
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| license_family: GPL | ||||||
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| license_file: LICENSE | ||||||
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| extra: | ||||||
| skip-lints: | ||||||
| - uses_vcs_url | ||||||
| - missing_hash | ||||||
| identifiers: | ||||||
| - doi:https://doi.org/10.1093/bioinformatics/btae428 | ||||||
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Why don't you use https://github.com/refresh-bio/protestar/archive/refs/tags/v1.1.0.tar.gz + sha256 ?
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Hello,
The reason we have used
git_urlis the presence of submodules, which are not included in release tarballs. However, as protestar developers, we have a full control on version tags, thus we believe usinggit_urlis similarly safe as using releases.We have different problem, though. We use some modern C++ multithreading features that require g++-11 for compilation. Unfortunately, these features are not supported by clang. Therefore, I would like to know if there is some workaround to install g++ in macOS conda environment in order to build a package.
Best Regards,
Adam
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To be precise, the question about g++ on macOS environment actually concerns some other packages we plan to submit to bioconda, not protestar.
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I think you could achieve this by using custom
conda_build_config.yamlwith contents like:See https://github.com/conda-forge/conda-forge-pinning-feedstock/blob/a7b5c2d598ef642f911f9a0055ddf92666c6af08/recipe/conda_build_config.yaml for all defaults.
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Thank you for the response! Unfortunately, I got the following message in macOS environment (I have altered also
c_compiler_versionandcxx_compiler_versionto 12 so it does not search for g++-16):Do you have an idea, how to fix this?
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This problem actually concerns #49740 pull request.