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slobentanzer committed Nov 13, 2023
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# biochatter
# BioChatter

This repository contains the `biochatter` Python package, a generic backend
library for the connection of biomedical applications to conversational AI.
Described in [this preprint](https://arxiv.org/abs/2305.06488) and used in
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| __License__ | [![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT) | __Python__ | [![Python](https://img.shields.io/pypi/pyversions/biochatter)](https://www.python.org) |
| __Package__ | [![PyPI version](https://img.shields.io/pypi/v/biochatter)](https://pypi.org/project/biochatter/) [![Downloads](https://static.pepy.tech/badge/biochatter)](https://pepy.tech/project/biochatter) | __Build status__ | [![CI](https://github.com/biocypher/biochatter/actions/workflows/tests_and_code_quality.yaml/badge.svg)](https://github.com/biocypher/biochatter/actions/workflows/tests_and_code_quality.yaml) [![Docs build](https://github.com/biocypher/biochatter/actions/workflows/docs.yaml/badge.svg)](https://github.com/biocypher/biochatter/actions/workflows/docs.yaml) |
| __Tests__ | Coverage coming soon. | __Docker__ | [![Latest image](https://img.shields.io/docker/v/biocypher/chatgse)](https://hub.docker.com/repository/docker/biocypher/chatgse/general) [![Image size](https://img.shields.io/docker/image-size/biocypher/chatgse/latest)](https://hub.docker.com/repository/docker/biocypher/chatgse/general) |
| __Development__ | [![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active) [![Code style](https://img.shields.io/badge/code%20style-black-000000.svg)](https://black.readthedocs.io/en/stable/) | __Contributions__ | [![PRs Welcome](https://img.shields.io/badge/PRs-welcome-brightgreen.svg?style=flat-square)](http://makeapullrequest.com) [![Contributor Covenant](https://img.shields.io/badge/Contributor%20Covenant-2.1-4baaaa.svg)](CONTRIBUTING.md) |

## Description

Generative AI models have shown tremendous usefulness in increasing
accessibility and automation of a wide range of tasks. Yet, their application to
the biomedical domain is still limited, in part due to the lack of a common
framework for deploying, testing, and evaluating the diverse models and
auxiliary technologies that are needed. This repository contains the
`biochatter` Python package, a generic backend library for the connection of
biomedical applications to conversational AI. Described in [this
preprint](https://arxiv.org/abs/2305.06488) and used in
[ChatGSE](https://chat.biocypher.org), which is being developed at
https://github.com/biocypher/ChatGSE. More to come, so stay tuned!

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