Improve new prefix form

.github/ISSUE_TEMPLATE/new-prefix.yml

@@ -42,7 +42,7 @@ body:
   - type: input
     id: repository
     attributes:
-      label: Repository
+      label: Source Code Repository
       description: |
         What is the version control repository associated with this prefix?
 
@@ -64,6 +64,14 @@ body:
       description: |
         What is the repository's license? Write with a SPDX identifier, if possible.
       placeholder: ex. CC0
+  - type: input
+    id: publications
+    attributes:
+      label: Publications
+      description: |
+        If you have a PubMed identifier, PMC identifier, or DOI with an article associated with this resource, please put it here. Please write publications using CURIE syntax. Please delimit multiple unique publications with a pipe "|" character. You only need one CURIE for each publication.
+      placeholder: ex. doi:10.1101/2022.07.08.499378 | pubmed:33290552 | pmc:PMC4383985
+
   - type: input
     id: example
     attributes:
@@ -129,7 +137,13 @@ body:
       placeholder: ex. 0000-0003-4423-4370
     validations:
       required: true
-
+  - type: input
+    id: contributor_email
+    attributes:
+      label: Contributor Email
+      description: Please provide your email address (optional) so others can contact you regarding your contribution
+      placeholder: ex. cthoyt@gmail.com
+
   - type: input
     id: contact_name
     attributes:

src/bioregistry/gh/new_prefix.py

@@ -18,7 +18,7 @@
 from bioregistry.constants import BIOREGISTRY_PATH, URI_FORMAT_KEY
 from bioregistry.gh import github_client
 from bioregistry.license_standardizer import standardize_license
-from bioregistry.schema import Author, Resource
+from bioregistry.schema import Author, Publication, Resource
 from bioregistry.schema_utils import add_resource
 from bioregistry.utils import removeprefix
 
@@ -41,14 +41,15 @@
     "Contributor ORCiD": "contributor_orcid",
     "Contributor Name": "contributor_name",
     "Contributor GitHub": "contributor_github",
-    "Contributor Email": "contributor_email",
+    "Contributor Email": "contributor_email",  # enabled in https://github.com/biopragmatics/bioregistry/pull/1000
     "Contact ORCiD": "contact_orcid",
     "Contact Name": "contact_name",
     "Contact Email": "contact_email",
     "Contact GitHub": "contact_github",
     "Wikidata Property": "wikidata_prefix",
     "License": "license",
-    "Repository": "repository",
+    "Repository": "repository",  # old
+    "Source Code Repository": "repository",
 }
 
 ORCID_HTTP_PREFIX = "http://orcid.org/"
@@ -119,6 +120,8 @@
         if data_license:
             resource_data["license"] = standardize_license(data_license) or data_license
 
+        publications = list(_yield_publications(resource_data))
+
         if bioregistry.get_resource(prefix) is not None:
             # TODO close issue
             logger.warning(
@@ -134,11 +137,25 @@
             github_request_issue=issue_id,
             wikidata=wikidata,
             mappings=mappings,
+            publications=publications,
             **resource_data,  # type:ignore
         )
     return rv
 
 
+def _yield_publications(data) -> Iterable[Publication]:
+    for curie in data.pop("publications", "").split("|"):
+        curie = curie.strip().lower()
+        try:
+            prefix, luid = curie.split(":", 1)
+        except ValueError:
+            click.echo(f"invalid CURIE: {curie}")
+            continue
+        if prefix == "pmid":
+            prefix = "pubmed"
+        yield Publication(**{prefix: luid})
+
+
 def _pop_orcid(data: Dict[str, str]) -> str:
     orcid = data.pop("contributor_orcid")
     return _trim_orcid(orcid)