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132 Open 186 Closed
132 Open 186 Closed
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Issues list

Inappropriate hard-coded constant const.MAX_TOTAL_DROPLETS_GUESSED for large datasets?
#390 opened Oct 23, 2024 by colobas
Unexpected Increases in nCount and nFeature Post-CellBender Processing
#389 opened Oct 23, 2024 by echovv
simpleaf + cellbender does not seem to function well
#388 opened Oct 21, 2024 by robertzeibich
Report issue saving checkpoint
#386 opened Oct 1, 2024 by acerdenno
1
Report output fails when count matrix has float counts instead of integers
#384 opened Sep 11, 2024 by MNM-TB
webcolors version problem
#383 opened Sep 11, 2024 by nictru
struct.error: 'i' format requires -2147483648 <= number <= 2147483647
#382 opened Sep 4, 2024 by yuanjianwen-gif
Coupling CellBender w/ other preprocessing tools--doublet detection, demultiplexing
#381 opened Sep 3, 2024 by lhoranportelance
1
load_anndata_from_input_and_output: retain_input_metadata input to nowhere
#380 opened Aug 24, 2024 by benemead
2
NM
#379 opened Aug 20, 2024 by ghost
raw h5ad OR filtered h5ad
#378 opened Aug 19, 2024 by elegantmedstu
1
Mismatch between summary for algorithm convergence and learning curve
#377 opened Aug 6, 2024 by KaczorowskiLab
CellBender for .BAM file
#375 opened Jul 24, 2024 by jzheng25
RuntimeError: CUDA driver error: invalid argument - Google Container Registry (GCR)
#374 opened Jul 16, 2024 by AClab-sgarcia
Cellbender on multiplexed chemistries
#373 opened Jul 11, 2024 by LinearParadox
Fixed Single cell RNA seq
#372 opened Jul 8, 2024 by archana433
1
Not saving ckpt.tar.gz checkpoint
#371 opened Jul 4, 2024 by IsauraMaria96
8
OOM posterior inference for chimeric sample even using --posterior-batch-size 1
#370 opened Jul 1, 2024 by njbernstein
Background Fraction
#369 opened Jun 27, 2024 by hk2rma
3
Importance of model loss
#366 opened Jun 13, 2024 by ShadHOH
Can't Computing target noise counts per gene for MCKP estimator
#365 opened Jun 10, 2024 by Deroline10
1
Unhandled division by zero
#363 opened May 30, 2024 by fm361
Computing the output in asynchronous chunks in parallel takes longer than 144 hours
#362 opened May 28, 2024 by Erhei130
1
Question about input h5 file
#361 opened May 28, 2024 by Linxiaobuskiy
1
Should I keep decreasing the learning rate?
#360 opened May 22, 2024 by txemaheredia
1
ProTip! Adding no:label will show everything without a label.