Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

missing tab/release in GitHub + release on PyPI for v0.3.1 #324

Open
boegel opened this issue Jan 30, 2024 · 2 comments
Open

missing tab/release in GitHub + release on PyPI for v0.3.1 #324

boegel opened this issue Jan 30, 2024 · 2 comments

Comments

@boegel
Copy link

boegel commented Jan 30, 2024

PRs #303 and #304 show that there's a 0.3.1 version of CellBender, but the corresponding commit was not tagged (cfr. https://github.com/broadinstitute/CellBender/tags), and hence there's also no corresponding 0.3.1 release in GitHub (cfr. https://github.com/broadinstitute/CellBender/releases).

In addition, there's no 0.3.1 release available via PyPI either, see https://pypi.org/project/cellbender/#history

Is this deliberate for some reason?

@bobermayer
Copy link

see #306

@sjfleming
Copy link
Member

Thanks for responding @bobermayer !

Yes @boegel , @bobermayer is correct. This is deliberate, as I have made an attempt to completely redact v0.3.1. There was a bad bug that messed up the final output-creation step of the code.

I have finally gotten around to fixing the bug #347
and soon I will release a tagged v0.3.2 on github along with a PyPI v0.3.2.

To anyone who reads this, please see the WARNING posted on the current README
https://github.com/broadinstitute/CellBender/blob/master/README.rst

which also suggests a way to salvage runs of v0.3.1, if you managed to install from that tag while it existed, or if you installed directly from source during the (long) period of time when the master branch was compromised with this bug.

@sjfleming sjfleming pinned this issue Apr 12, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

3 participants