get cram from iRods archive #227
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Modified code to accept iRods file path for BAMs. |
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Note: you will need to make sure the hpf account you're running the pipeline from has access to the iRods directory you've linked in units.tsv
Example iRods path: /resarchivezone/tcag/translational_genomics/illumina/genodermatoses/SZU25195/sample.cram