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Update data sources with end dates (#117, #131)
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- Update vaccine coverage data to end on 2023-09-10 for all PTs (except QC), since this is the last date that all vaccine dose coverage values were reported (in particular, dose 2 coverage is excluded after this date) (#21)
- Update vaccine distribution data with appropriate end dates and sources (#22)
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@jeanpaulrsoucy
jeanpaulrsoucy committed Jan 27, 2024
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56 changes: 41 additions & 15 deletions docs/data_sources/data_sources.csv
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Original file line number Diff line number Diff line change
Expand Up @@ -203,20 +203,20 @@ tests_completed,QC,INSPQ time series data CSV,3b93b663-4b3f-43b4-a23d-cbf6d149d2
tests_completed,SK,Public Health Agency of Canada System for Analyzing Laboratory Test counts (SALT),366ce221-c1c9-4f41-a917-8ff4648f6a40,ts,static,static/can/can_tests_completed_pt_ts.csv,province_territory,2020-01-01,2022-11-19,,,,,,,,3,
tests_completed,SK,Public Health Agency of Canada Respiratory Virus Detection Surveillance System (RVDSS),e41c63ec-ac54-47c9-8cf3-da2e1146aa75,ts,active_ts,active_ts/can/can_tests_completed_pt_ts.csv,province_territory,2022-11-26,2023-12-30,,,,T,weekly,,,10,
tests_completed,YT,Yukon dashboard,4a33ab2c-32a4-4630-8f6b-2bac2b1ce7ca,ts,static,static/yt/yt_tests_completed_pt_ts.csv,province_territory,2020-02-27,2022-11-10,,,,MTWRF,daily,Releases are somewhat less consistent than the schedule implies,,0,
vaccine_coverage,CAN,Public Health Agency of Canada vaccination coverage,d0bfcd85-9552-47a5-a699-aa6fe4815e00,ts,active_ts,active_ts/can/can_vaccine_coverage_*_pt_ts.csv,province_territory,2020-12-19,present,,,,,,,,,
vaccine_coverage,AB,Public Health Agency of Canada vaccination coverage,d0bfcd85-9552-47a5-a699-aa6fe4815e00,ts,active_ts,active_ts/can/can_vaccine_coverage_*_pt_ts.csv,province_territory,2020-12-19,present,,,,,,,,,
vaccine_coverage,BC,Public Health Agency of Canada vaccination coverage,d0bfcd85-9552-47a5-a699-aa6fe4815e00,ts,active_ts,active_ts/can/can_vaccine_coverage_*_pt_ts.csv,province_territory,2020-12-19,present,,,,,,,,,
vaccine_coverage,MB,Public Health Agency of Canada vaccination coverage,d0bfcd85-9552-47a5-a699-aa6fe4815e00,ts,active_ts,active_ts/can/can_vaccine_coverage_*_pt_ts.csv,province_territory,2020-12-19,present,,,,,,,,,
vaccine_coverage,NB,Public Health Agency of Canada vaccination coverage,d0bfcd85-9552-47a5-a699-aa6fe4815e00,ts,active_ts,active_ts/can/can_vaccine_coverage_*_pt_ts.csv,province_territory,2020-12-19,present,,,,,,,,,
vaccine_coverage,NL,Public Health Agency of Canada vaccination coverage,d0bfcd85-9552-47a5-a699-aa6fe4815e00,ts,active_ts,active_ts/can/can_vaccine_coverage_*_pt_ts.csv,province_territory,2020-12-19,present,,,,,,,,,
vaccine_coverage,NS,Public Health Agency of Canada vaccination coverage,d0bfcd85-9552-47a5-a699-aa6fe4815e00,ts,active_ts,active_ts/can/can_vaccine_coverage_*_pt_ts.csv,province_territory,2020-12-19,present,,,,,,,,,
vaccine_coverage,NT,Public Health Agency of Canada vaccination coverage,d0bfcd85-9552-47a5-a699-aa6fe4815e00,ts,active_ts,active_ts/can/can_vaccine_coverage_*_pt_ts.csv,province_territory,2020-12-19,present,,,,,,,,,
vaccine_coverage,NU,Public Health Agency of Canada vaccination coverage,d0bfcd85-9552-47a5-a699-aa6fe4815e00,ts,active_ts,active_ts/can/can_vaccine_coverage_*_pt_ts.csv,province_territory,2020-12-19,present,,,,,,,,,
vaccine_coverage,ON,Public Health Agency of Canada vaccination coverage,d0bfcd85-9552-47a5-a699-aa6fe4815e00,ts,active_ts,active_ts/can/can_vaccine_coverage_*_pt_ts.csv,province_territory,2020-12-19,present,,,,,,,,,
vaccine_coverage,PE,Public Health Agency of Canada vaccination coverage,d0bfcd85-9552-47a5-a699-aa6fe4815e00,ts,active_ts,active_ts/can/can_vaccine_coverage_*_pt_ts.csv,province_territory,2020-12-19,present,,,,,,,,,
vaccine_coverage,CAN,Public Health Agency of Canada vaccination coverage,d0bfcd85-9552-47a5-a699-aa6fe4815e00,ts,active_ts,active_ts/can/can_vaccine_coverage_*_pt_ts.csv,province_territory,2020-12-19,2023-09-10,,,,,,,,,
vaccine_coverage,AB,Public Health Agency of Canada vaccination coverage,d0bfcd85-9552-47a5-a699-aa6fe4815e00,ts,active_ts,active_ts/can/can_vaccine_coverage_*_pt_ts.csv,province_territory,2020-12-19,2023-09-10,,,,,,,,,
vaccine_coverage,BC,Public Health Agency of Canada vaccination coverage,d0bfcd85-9552-47a5-a699-aa6fe4815e00,ts,active_ts,active_ts/can/can_vaccine_coverage_*_pt_ts.csv,province_territory,2020-12-19,2023-09-10,,,,,,,,,
vaccine_coverage,MB,Public Health Agency of Canada vaccination coverage,d0bfcd85-9552-47a5-a699-aa6fe4815e00,ts,active_ts,active_ts/can/can_vaccine_coverage_*_pt_ts.csv,province_territory,2020-12-19,2023-09-10,,,,,,,,,
vaccine_coverage,NB,Public Health Agency of Canada vaccination coverage,d0bfcd85-9552-47a5-a699-aa6fe4815e00,ts,active_ts,active_ts/can/can_vaccine_coverage_*_pt_ts.csv,province_territory,2020-12-19,2023-09-10,,,,,,,,,
vaccine_coverage,NL,Public Health Agency of Canada vaccination coverage,d0bfcd85-9552-47a5-a699-aa6fe4815e00,ts,active_ts,active_ts/can/can_vaccine_coverage_*_pt_ts.csv,province_territory,2020-12-19,2023-09-10,,,,,,,,,
vaccine_coverage,NS,Public Health Agency of Canada vaccination coverage,d0bfcd85-9552-47a5-a699-aa6fe4815e00,ts,active_ts,active_ts/can/can_vaccine_coverage_*_pt_ts.csv,province_territory,2020-12-19,2023-09-10,,,,,,,,,
vaccine_coverage,NT,Public Health Agency of Canada vaccination coverage,d0bfcd85-9552-47a5-a699-aa6fe4815e00,ts,active_ts,active_ts/can/can_vaccine_coverage_*_pt_ts.csv,province_territory,2020-12-19,2023-09-10,,,,,,,,,
vaccine_coverage,NU,Public Health Agency of Canada vaccination coverage,d0bfcd85-9552-47a5-a699-aa6fe4815e00,ts,active_ts,active_ts/can/can_vaccine_coverage_*_pt_ts.csv,province_territory,2020-12-19,2023-09-10,,,,,,,,,
vaccine_coverage,ON,Public Health Agency of Canada vaccination coverage,d0bfcd85-9552-47a5-a699-aa6fe4815e00,ts,active_ts,active_ts/can/can_vaccine_coverage_*_pt_ts.csv,province_territory,2020-12-19,2023-09-10,,,,,,,,,
vaccine_coverage,PE,Public Health Agency of Canada vaccination coverage,d0bfcd85-9552-47a5-a699-aa6fe4815e00,ts,active_ts,active_ts/can/can_vaccine_coverage_*_pt_ts.csv,province_territory,2020-12-19,2023-09-10,,,,,,,,,
vaccine_coverage,QC,Public Health Agency of Canada vaccination coverage,d0bfcd85-9552-47a5-a699-aa6fe4815e00,ts,active_ts,active_ts/can/can_vaccine_coverage_*_pt_ts.csv,province_territory,2020-12-19,2022-07-17,,,,,,,,,
vaccine_coverage,SK,Public Health Agency of Canada vaccination coverage,d0bfcd85-9552-47a5-a699-aa6fe4815e00,ts,active_ts,active_ts/can/can_vaccine_coverage_*_pt_ts.csv,province_territory,2020-12-19,present,,,,,,,,,
vaccine_coverage,YT,Public Health Agency of Canada vaccination coverage,d0bfcd85-9552-47a5-a699-aa6fe4815e00,ts,active_ts,active_ts/can/can_vaccine_coverage_*_pt_ts.csv,province_territory,2020-12-19,present,,,,,,,,,
vaccine_coverage,SK,Public Health Agency of Canada vaccination coverage,d0bfcd85-9552-47a5-a699-aa6fe4815e00,ts,active_ts,active_ts/can/can_vaccine_coverage_*_pt_ts.csv,province_territory,2020-12-19,2023-09-10,,,,,,,,,
vaccine_coverage,YT,Public Health Agency of Canada vaccination coverage,d0bfcd85-9552-47a5-a699-aa6fe4815e00,ts,active_ts,active_ts/can/can_vaccine_coverage_*_pt_ts.csv,province_territory,2020-12-19,2023-09-10,,,,,,,,,
vaccine_administration,AB,CCODWG Covid19Canada dataset,,ts,ccodwg,ccodwg/can_vaccine_administration_*_pt_ts.csv,province_territory,2020-12-19,2020-12-19,,,,,,,,,
vaccine_administration,AB,Public Health Agency of Canada vaccination administration,194a0002-5ad1-4016-8788-e7a216216a92,ts,active_ts,active_ts/can/vaccine_administration_*_pt_ts.csv,province_territory,2020-12-19,present,,,,,,,,,
vaccine_administration,BC,Public Health Agency of Canada vaccination administration,194a0002-5ad1-4016-8788-e7a216216a92,ts,active_ts,active_ts/can/vaccine_administration_*_pt_ts.csv,province_territory,2020-12-19,present,,,,,,,,,
Expand All @@ -235,5 +235,31 @@ vaccine_administration,PE,Public Health Agency of Canada vaccination administrat
vaccine_administration,QC,MSSS vaccine administration CSV,4e04442d-f372-4357-ba15-3b64f4e03fbe,ts,active_ts,active_ts/qc/qc_vaccine_administration_*_pt_ts.csv,province_territory,2020-12-19,present,,,,,,,,,
vaccine_administration,SK,Public Health Agency of Canada vaccination administration,194a0002-5ad1-4016-8788-e7a216216a92,ts,active_ts,active_ts/can/vaccine_administration_*_pt_ts.csv,province_territory,2020-12-19,present,,,,,,,,,
vaccine_administration,YT,Public Health Agency of Canada vaccination administration,194a0002-5ad1-4016-8788-e7a216216a92,ts,active_ts,active_ts/can/vaccine_administration_*_pt_ts.csv,province_territory,2020-12-19,present,,,,,,,,,
vaccine_distribution,CAN,CCODWG Covid19Canada dataset,,ts,ccodwg,ccodwg/can_vaccine_distribution_pt_ts.csv,province_territory,2020-12-19,2021-01-01,,,,,,,,,
vaccine_distribution,CAN,Public Health Agency of Canada doses distributed,9b813cb3-fc1b-4e01-8b7c-a4514e242f35,ts,static,static/can/can_vaccine_distribution_total_doses_pt_ts.csv,province_territory,2020-12-19,2023-07-14,,,,,,,,,
vaccine_distribution,CAN,CCODWG Covid19Canada dataset,,ts,ccodwg,ccodwg/can_vaccine_distribution_pt_ts.csv,province_territory,2020-12-13,2021-01-01,,,,,,,,,
vaccine_distribution,CAN,Public Health Agency of Canada doses distributed,9b813cb3-fc1b-4e01-8b7c-a4514e242f35,ts,static,static/can/can_vaccine_distribution_total_doses_pt_ts.csv,province_territory,2021-01-02,2023-07-14,,,,,,,,,
vaccine_distribution,AB,CCODWG Covid19Canada dataset,,ts,ccodwg,ccodwg/can_vaccine_distribution_pt_ts.csv,province_territory,2020-12-13,2021-01-01,,,,,,,,,
vaccine_distribution,AB,Public Health Agency of Canada doses distributed,9b813cb3-fc1b-4e01-8b7c-a4514e242f35,ts,static,static/can/can_vaccine_distribution_total_doses_pt_ts.csv,province_territory,2021-01-02,2023-07-14,,,,,,,,,
vaccine_distribution,BC,CCODWG Covid19Canada dataset,,ts,ccodwg,ccodwg/can_vaccine_distribution_pt_ts.csv,province_territory,2020-12-13,2021-01-01,,,,,,,,,
vaccine_distribution,BC,Public Health Agency of Canada doses distributed,9b813cb3-fc1b-4e01-8b7c-a4514e242f35,ts,static,static/can/can_vaccine_distribution_total_doses_pt_ts.csv,province_territory,2021-01-02,2023-07-14,,,,,,,,,
vaccine_distribution,MB,CCODWG Covid19Canada dataset,,ts,ccodwg,ccodwg/can_vaccine_distribution_pt_ts.csv,province_territory,2020-12-13,2021-01-01,,,,,,,,,
vaccine_distribution,MB,Public Health Agency of Canada doses distributed,9b813cb3-fc1b-4e01-8b7c-a4514e242f35,ts,static,static/can/can_vaccine_distribution_total_doses_pt_ts.csv,province_territory,2021-01-02,2023-07-14,,,,,,,,,
vaccine_distribution,NB,CCODWG Covid19Canada dataset,,ts,ccodwg,ccodwg/can_vaccine_distribution_pt_ts.csv,province_territory,2020-12-13,2021-01-01,,,,,,,,,
vaccine_distribution,NB,Public Health Agency of Canada doses distributed,9b813cb3-fc1b-4e01-8b7c-a4514e242f35,ts,static,static/can/can_vaccine_distribution_total_doses_pt_ts.csv,province_territory,2021-01-02,2023-07-14,,,,,,,,,
vaccine_distribution,NL,CCODWG Covid19Canada dataset,,ts,ccodwg,ccodwg/can_vaccine_distribution_pt_ts.csv,province_territory,2020-12-13,2021-01-01,,,,,,,,,
vaccine_distribution,NL,Public Health Agency of Canada doses distributed,9b813cb3-fc1b-4e01-8b7c-a4514e242f35,ts,static,static/can/can_vaccine_distribution_total_doses_pt_ts.csv,province_territory,2021-01-02,2023-07-14,,,,,,,,,
vaccine_distribution,NS,CCODWG Covid19Canada dataset,,ts,ccodwg,ccodwg/can_vaccine_distribution_pt_ts.csv,province_territory,2020-12-13,2021-01-01,,,,,,,,,
vaccine_distribution,NS,Public Health Agency of Canada doses distributed,9b813cb3-fc1b-4e01-8b7c-a4514e242f35,ts,static,static/can/can_vaccine_distribution_total_doses_pt_ts.csv,province_territory,2021-01-02,2023-07-14,,,,,,,,,
vaccine_distribution,NT,CCODWG Covid19Canada dataset,,ts,ccodwg,ccodwg/can_vaccine_distribution_pt_ts.csv,province_territory,2020-12-13,2021-01-01,,,,,,,,,
vaccine_distribution,NT,Public Health Agency of Canada doses distributed,9b813cb3-fc1b-4e01-8b7c-a4514e242f35,ts,static,static/can/can_vaccine_distribution_total_doses_pt_ts.csv,province_territory,2021-01-02,2023-07-14,,,,,,,,,
vaccine_distribution,NU,CCODWG Covid19Canada dataset,,ts,ccodwg,ccodwg/can_vaccine_distribution_pt_ts.csv,province_territory,2020-12-13,2021-01-01,,,,,,,,,
vaccine_distribution,NU,Public Health Agency of Canada doses distributed,9b813cb3-fc1b-4e01-8b7c-a4514e242f35,ts,static,static/can/can_vaccine_distribution_total_doses_pt_ts.csv,province_territory,2021-01-02,2023-07-14,,,,,,,,,
vaccine_distribution,ON,CCODWG Covid19Canada dataset,,ts,ccodwg,ccodwg/can_vaccine_distribution_pt_ts.csv,province_territory,2020-12-13,2021-01-01,,,,,,,,,
vaccine_distribution,ON,Public Health Agency of Canada doses distributed,9b813cb3-fc1b-4e01-8b7c-a4514e242f35,ts,static,static/can/can_vaccine_distribution_total_doses_pt_ts.csv,province_territory,2021-01-02,2023-07-14,,,,,,,,,
vaccine_distribution,PE,CCODWG Covid19Canada dataset,,ts,ccodwg,ccodwg/can_vaccine_distribution_pt_ts.csv,province_territory,2020-12-13,2021-01-01,,,,,,,,,
vaccine_distribution,PE,Public Health Agency of Canada doses distributed,9b813cb3-fc1b-4e01-8b7c-a4514e242f35,ts,static,static/can/can_vaccine_distribution_total_doses_pt_ts.csv,province_territory,2021-01-02,2023-07-14,,,,,,,,,
vaccine_distribution,QC,CCODWG Covid19Canada dataset,,ts,ccodwg,ccodwg/can_vaccine_distribution_pt_ts.csv,province_territory,2020-12-13,2021-01-01,,,,,,,,,
vaccine_distribution,QC,Public Health Agency of Canada doses distributed,9b813cb3-fc1b-4e01-8b7c-a4514e242f35,ts,static,static/can/can_vaccine_distribution_total_doses_pt_ts.csv,province_territory,2021-01-02,2023-07-14,,,,,,,,,
vaccine_distribution,SK,CCODWG Covid19Canada dataset,,ts,ccodwg,ccodwg/can_vaccine_distribution_pt_ts.csv,province_territory,2020-12-13,2021-01-01,,,,,,,,,
vaccine_distribution,SK,Public Health Agency of Canada doses distributed,9b813cb3-fc1b-4e01-8b7c-a4514e242f35,ts,static,static/can/can_vaccine_distribution_total_doses_pt_ts.csv,province_territory,2021-01-02,2023-07-14,,,,,,,,,
vaccine_distribution,YT,CCODWG Covid19Canada dataset,,ts,ccodwg,ccodwg/can_vaccine_distribution_pt_ts.csv,province_territory,2020-12-13,2021-01-01,,,,,,,,,
vaccine_distribution,YT,Public Health Agency of Canada doses distributed,9b813cb3-fc1b-4e01-8b7c-a4514e242f35,ts,static,static/can/can_vaccine_distribution_total_doses_pt_ts.csv,province_territory,2021-01-02,2023-07-14,,,,,,,,,
41 changes: 27 additions & 14 deletions docs/data_sources/data_sources.md
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Expand Up @@ -145,20 +145,20 @@

| P/T | Data sources |
|:------|:------------------------------------------------------------------------------|
| AB | - Public Health Agency of Canada vaccination coverage (2020-12-19–present) |
| BC | - Public Health Agency of Canada vaccination coverage (2020-12-19–present) |
| CAN | - Public Health Agency of Canada vaccination coverage (2020-12-19–present) |
| MB | - Public Health Agency of Canada vaccination coverage (2020-12-19–present) |
| NB | - Public Health Agency of Canada vaccination coverage (2020-12-19–present) |
| NL | - Public Health Agency of Canada vaccination coverage (2020-12-19–present) |
| NS | - Public Health Agency of Canada vaccination coverage (2020-12-19–present) |
| NT | - Public Health Agency of Canada vaccination coverage (2020-12-19–present) |
| NU | - Public Health Agency of Canada vaccination coverage (2020-12-19–present) |
| ON | - Public Health Agency of Canada vaccination coverage (2020-12-19–present) |
| PE | - Public Health Agency of Canada vaccination coverage (2020-12-19–present) |
| AB | - Public Health Agency of Canada vaccination coverage (2020-12-19–2023-09-10) |
| BC | - Public Health Agency of Canada vaccination coverage (2020-12-19–2023-09-10) |
| CAN | - Public Health Agency of Canada vaccination coverage (2020-12-19–2023-09-10) |
| MB | - Public Health Agency of Canada vaccination coverage (2020-12-19–2023-09-10) |
| NB | - Public Health Agency of Canada vaccination coverage (2020-12-19–2023-09-10) |
| NL | - Public Health Agency of Canada vaccination coverage (2020-12-19–2023-09-10) |
| NS | - Public Health Agency of Canada vaccination coverage (2020-12-19–2023-09-10) |
| NT | - Public Health Agency of Canada vaccination coverage (2020-12-19–2023-09-10) |
| NU | - Public Health Agency of Canada vaccination coverage (2020-12-19–2023-09-10) |
| ON | - Public Health Agency of Canada vaccination coverage (2020-12-19–2023-09-10) |
| PE | - Public Health Agency of Canada vaccination coverage (2020-12-19–2023-09-10) |
| QC | - Public Health Agency of Canada vaccination coverage (2020-12-19–2022-07-17) |
| SK | - Public Health Agency of Canada vaccination coverage (2020-12-19–present) |
| YT | - Public Health Agency of Canada vaccination coverage (2020-12-19–present) |
| SK | - Public Health Agency of Canada vaccination coverage (2020-12-19–2023-09-10) |
| YT | - Public Health Agency of Canada vaccination coverage (2020-12-19–2023-09-10) |
</details>

<details>
Expand Down Expand Up @@ -186,5 +186,18 @@

| P/T | Data sources |
|:------|:-------------------------------------------------------------------------------------------------------------------------------------|
| CAN | - CCODWG Covid19Canada dataset (2020-12-19–2021-01-01)<br>- Public Health Agency of Canada doses distributed (2020-12-19–2023-07-14) |
| AB | - CCODWG Covid19Canada dataset (2020-12-13–2021-01-01)<br>- Public Health Agency of Canada doses distributed (2021-01-02–2023-07-14) |
| BC | - CCODWG Covid19Canada dataset (2020-12-13–2021-01-01)<br>- Public Health Agency of Canada doses distributed (2021-01-02–2023-07-14) |
| CAN | - CCODWG Covid19Canada dataset (2020-12-13–2021-01-01)<br>- Public Health Agency of Canada doses distributed (2021-01-02–2023-07-14) |
| MB | - CCODWG Covid19Canada dataset (2020-12-13–2021-01-01)<br>- Public Health Agency of Canada doses distributed (2021-01-02–2023-07-14) |
| NB | - CCODWG Covid19Canada dataset (2020-12-13–2021-01-01)<br>- Public Health Agency of Canada doses distributed (2021-01-02–2023-07-14) |
| NL | - CCODWG Covid19Canada dataset (2020-12-13–2021-01-01)<br>- Public Health Agency of Canada doses distributed (2021-01-02–2023-07-14) |
| NS | - CCODWG Covid19Canada dataset (2020-12-13–2021-01-01)<br>- Public Health Agency of Canada doses distributed (2021-01-02–2023-07-14) |
| NT | - CCODWG Covid19Canada dataset (2020-12-13–2021-01-01)<br>- Public Health Agency of Canada doses distributed (2021-01-02–2023-07-14) |
| NU | - CCODWG Covid19Canada dataset (2020-12-13–2021-01-01)<br>- Public Health Agency of Canada doses distributed (2021-01-02–2023-07-14) |
| ON | - CCODWG Covid19Canada dataset (2020-12-13–2021-01-01)<br>- Public Health Agency of Canada doses distributed (2021-01-02–2023-07-14) |
| PE | - CCODWG Covid19Canada dataset (2020-12-13–2021-01-01)<br>- Public Health Agency of Canada doses distributed (2021-01-02–2023-07-14) |
| QC | - CCODWG Covid19Canada dataset (2020-12-13–2021-01-01)<br>- Public Health Agency of Canada doses distributed (2021-01-02–2023-07-14) |
| SK | - CCODWG Covid19Canada dataset (2020-12-13–2021-01-01)<br>- Public Health Agency of Canada doses distributed (2021-01-02–2023-07-14) |
| YT | - CCODWG Covid19Canada dataset (2020-12-13–2021-01-01)<br>- Public Health Agency of Canada doses distributed (2021-01-02–2023-07-14) |
</details>

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