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Make microtest samples work again, as part of #442.
Some of them stopped working when we stopped merging contigs into a full-genome reference.
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Original file line number | Diff line number | Diff line change |
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@@ -1,92 +1,92 @@ | ||
@M01234:01:000000000-AAAAA:1:1101:02070:0001 1:N:0:9:del_codon_36 | ||
@M01234:01:000000000-AAAAA:1:1101:02120:0001 1:N:0:9:del_codon_36 | ||
GATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGGACATAAAGCTATAGGTACA | ||
+ | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:02070:0002 1:N:0:9:stop_codon_18,low_qual_codon_21 | ||
@M01234:01:000000000-AAAAA:1:1101:02120:0002 1:N:0:9:stop_codon_18,low_qual_codon_21 | ||
GATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGTGATGATGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAAT | ||
+ | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA/////////AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:02070:0003 1:N:0:9:low_qual_codon_21 | ||
@M01234:01:000000000-AAAAA:1:1101:02120:0003 1:N:0:9:low_qual_codon_21 | ||
GATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAAT | ||
+ | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA/////////AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:02070:0004 1:N:0:9:ins_after_codon_27_full_codon | ||
@M01234:01:000000000-AAAAA:1:1101:02120:0004 1:N:0:9:ins_after_codon_27_full_codon | ||
GATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAGGGAGACAGTATGATCAGATACTCATAGA | ||
+ | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:02070:0005 1:N:0:9:ins_after_codon_27_first_nuc | ||
@M01234:01:000000000-AAAAA:1:1101:02120:0005 1:N:0:9:ins_after_codon_27_first_nuc | ||
GATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGCTAAGACAGTATGATCAGATACTCATAGAAA | ||
+ | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:02070:0006 1:N:0:9:ins_after_codon_27_second_nuc | ||
@M01234:01:000000000-AAAAA:1:1101:02120:0006 1:N:0:9:ins_after_codon_27_second_nuc | ||
GATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTGAAGACAGTATGATCAGATACTCATAGAAA | ||
+ | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:02070:0007 1:N:0:9:ins_after_codon_27_third_nuc | ||
@M01234:01:000000000-AAAAA:1:1101:02120:0007 1:N:0:9:ins_after_codon_27_third_nuc | ||
GATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTACAGACAGTATGATCAGATACTCATAGAAA | ||
+ | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:02070:0008 1:N:0:9:soft_clipped_codons_30_to_35 | ||
@M01234:01:000000000-AAAAA:1:1101:02120:0008 1:N:0:9:soft_clipped_codons_30_to_35 | ||
GATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGGGGGGGGGGGGGGGGGGG | ||
+ | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:02070:0009 1:N:0:9:soft_clipped_codons_30_to_35 | ||
@M01234:01:000000000-AAAAA:1:1101:02120:0009 1:N:0:9:soft_clipped_codons_30_to_35 | ||
GATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGGGGGGGGGGGGGGGGGGG | ||
+ | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:02070:0010 1:N:0:9:soft_clipped_codons_30_to_35 | ||
@M01234:01:000000000-AAAAA:1:1101:02120:0010 1:N:0:9:soft_clipped_codons_30_to_35 | ||
GATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGGGGGGGGGGGGGGGGGGG | ||
+ | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:02070:0011 1:N:0:9:partial_del_codon_24 | ||
@M01234:01:000000000-AAAAA:1:1101:02120:0011 1:N:0:9:partial_del_codon_24 | ||
GATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCT | ||
+ | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:02070:0012 1:N:0:9:partial_del_codon_24 | ||
@M01234:01:000000000-AAAAA:1:1101:02120:0012 1:N:0:9:partial_del_codon_24 | ||
GATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCT | ||
+ | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:02070:0013 1:N:0:9:partial_del_codon_24 | ||
@M01234:01:000000000-AAAAA:1:1101:02120:0013 1:N:0:9:partial_del_codon_24 | ||
GATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCT | ||
+ | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:2120:0014 1:N:0:1 | ||
CCCATTAGCCCTATTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCA | ||
@M01234:01:000000000-AAAAA:1:1101:02120:0014 1:N:0:1:clean_read | ||
GATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAAT | ||
+ | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:2120:0015 1:N:0:1 | ||
CCCATTAGCCCTATTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCA | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:02120:0015 1:N:0:1:clean_read | ||
GATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAAT | ||
+ | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:2120:0016 1:N:0:1 | ||
CCCATTAGCCCTATTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCA | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:02120:0016 1:N:0:1:clean_read | ||
GATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAAT | ||
+ | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:2120:0017 1:N:0:1 | ||
CCCATTAGCCCTATTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCA | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:02120:0017 1:N:0:1:clean_read | ||
GATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAAT | ||
+ | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:2120:0018 1:N:0:1 | ||
CCCATTAGCCCTATTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCA | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:02120:0018 1:N:0:1:clean_read | ||
GATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAAT | ||
+ | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:2120:0019 1:N:0:1 | ||
CCCATTAGCCCTATTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCA | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:02120:0019 1:N:0:1:clean_read | ||
GATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAAT | ||
+ | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:2120:0020 1:N:0:1 | ||
CCCATTAGCCCTATTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCA | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:02120:0020 1:N:0:1:clean_read | ||
GATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAAT | ||
+ | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:2120:0021 1:N:0:1 | ||
CCCATTAGCCCTATTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCA | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:02120:0021 1:N:0:1:clean_read | ||
GATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAAT | ||
+ | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:2120:0022 1:N:0:1 | ||
CCCATTAGCCCTATTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCA | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:02120:0022 1:N:0:1:clean_read | ||
GATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAAT | ||
+ | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:2120:0023 1:N:0:1 | ||
CCCATTAGCCCTATTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCA | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
@M01234:01:000000000-AAAAA:1:1101:02120:0023 1:N:0:1:clean_read | ||
GATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAAT | ||
+ | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
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