Don't expect blast.csv in remapped mode, for #442.

cfe-lab · Nov 1, 2019 · 6d4a049 · 6d4a049
1 parent 4c6eb2b
commit 6d4a049
Show file tree

Hide file tree

Showing 2 changed files with 8 additions and 2 deletions.
diff --git a/Singularity b/Singularity
@@ -9,7 +9,7 @@ From: centos:7
 
     This Singularity container can be run on Kive: http://cfe-lab.github.io/Kive
 
-    Change Notes: Includes denovo assembly apps with merged contigs.
+    Change Notes: Includes denovo assembly apps with BLAST results displayed.
 
 %labels
     MAINTAINER BC CfE in HIV/AIDS https://github.com/cfe-lab/MiCall

diff --git a/micall/drivers/sample.py b/micall/drivers/sample.py
@@ -230,8 +230,14 @@ def process(self,
                           coverage_maps_prefix=self.name,
                           excluded_projects=excluded_projects)
 
+        if use_denovo:
+            blast_path = self.blast_csv
+        else:
+            blast_path = os.devnull
         with open(self.genome_coverage_csv) as genome_coverage_csv, \
-                open(self.blast_csv) as blast_csv:
+                open(blast_path) as blast_csv:
+            if not use_denovo:
+                blast_csv = None
             plot_genome_coverage(genome_coverage_csv,
                                  blast_csv,
                                  self.genome_coverage_svg)