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Add HIV references for Ghana strains #806

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donkirkby opened this issue Feb 7, 2022 · 0 comments
Closed

Add HIV references for Ghana strains #806

donkirkby opened this issue Feb 7, 2022 · 0 comments
Milestone
7.15 - HIVdb 9.0

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@donkirkby
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Recombinant strains are common in Ghana, so we want to add some references for samples in a research project. However, we don't want the recombinant references to confuse the regular pipeline, so they should be excluded from all other project codes and the BLAST search database.
@donkirkby donkirkby added this to the 7.15 - HIVdb 9.0 milestone Feb 7, 2022
donkirkby added a commit that referenced this issue Feb 7, 2022
@donkirkby
Fix broken test, as part of #806.
4725d68
donkirkby added a commit that referenced this issue Feb 7, 2022
@donkirkby
Make fetch_sequences.py easier to read, as part of #806.
16517be 
Also reorder build steps to speed up test failures.
@CBeelen CBeelen closed this as completed in 3c3f0f2 Feb 7, 2022
donkirkby added a commit that referenced this issue Feb 8, 2022
@donkirkby
Remove separate HIVGHA seed group, for #806.
3237072 
Exclude CRF sequences later in the pipeline.
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