Merge pull request #21 from cfe-lab/ubuntu1

Switch to Ubuntu in Singularity configuration

.github/workflows/python-app.yml

@@ -8,14 +8,14 @@ on: push
 jobs:
   build:
 
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
 
     steps:
     - uses: actions/checkout@v2
-    - name: Set up Python 3.8
-      uses: actions/setup-python@v2
+    - name: Set up Python 3.10
+      uses: actions/setup-python@v4
       with:
-        python-version: 3.8
+        python-version: '3.10'
     - name: Install minimap2
       run: |
         cd /opt

Pipfile

@@ -5,9 +5,9 @@ name = "pypi"
 
 [packages]
 gotoh = {subdirectory = "micall/alignment", ref = "v7.7.0", git = "https://github.com/cfe-lab/MiCall.git"}
-numpy = "==1.22.0"
+numpy = "==1.25.1"
 python-levenshtein = "==0.12.0"
-pandas = "==1.0.5"
+pandas = "==2.0.2"
 requests = "==2.31.0"
 pyyaml = "*"
 
@@ -16,4 +16,4 @@ pytest = "*"
 coverage = "*"
 
 [requires]
-python_version = "3.8"
+python_version = "3.10"