Add a function to inspect an ALT allele of VCF #164
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Codecov Report
@@ Coverage Diff @@
## master #164 +/- ##
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+ Coverage 86.1% 86.23% +0.12%
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Files 71 71
Lines 5419 5476 +57
Branches 489 490 +1
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+ Hits 4666 4722 +56
Misses 264 264
- Partials 489 490 +1
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Rebased the branch since #163 is merged |
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Sorry. Added a commit 2d1b506 to fix a bug. |
r6eve
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May 23, 2019
athos
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May 24, 2019
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This PR is depending on #163Summary
This PR adds a function to inspect an
ALTallele of a variant in VCF.The
ALTfield of VCF is so expressive that it is not so straightforward to know what they mean.cljam.io.vcf.util/inspect-alleleprovides a way to classifyALTalleles into91013 types.With this feature, we can easily transform VCF variants based on their types. (e.g. filtering only SNPs)
Tests
lein check🆗lein test :all🆗lein cloverage🆗