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Move to CI, include data, clean up dependencies, add examples #77

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Merged
merged 51 commits into from
May 24, 2022

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dajmcdon
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Just setting this up as a draft for the moment. May need to break into smaller incremental PRs.

ChloeYou and others added 30 commits May 4, 2022 17:50
Merge branch 'main' of https://github.com/dajmcdon/epiprocess into cy-add-roxygen-example

# Conflicts:
#	.Rbuildignore
* Generics used from other packages must be reexported
* Some missing args now documented
* Unpleasantness with S3 methods (see below)

Previously, all S3 methods for `epi_df` had `x` as the first argument. But this doesn't actually pass checks. Any method must match the generic signature. So this means replacing `x` with (variously) `object`/`.data`/`data`. This is a bit annoying to document all together. Adding an issue to split the methods up in the docs.
Merge branch 'main' of https://github.com/dajmcdon/epiprocess

# Conflicts:
#	.github/workflows/R-CMD-check.yaml
#	DESCRIPTION
Merge branch 'main' of https://github.com/dajmcdon/epiprocess into cy-add-roxygen-example

# Conflicts:
#	.Rbuildignore
#	DESCRIPTION
@dajmcdon dajmcdon requested review from dshemetov and brookslogan May 16, 2022 16:52
@dajmcdon dajmcdon marked this pull request as ready for review May 17, 2022 21:51
@@ -1,5 +1,10 @@
# epiprocess

<!-- badges: start -->
[![R-CMD-check](https://github.com/dajmcdon/epiprocess/workflows/R-CMD-check/badge.svg)](https://github.com/dajmcdon/epiprocess/actions)
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I assume the URL here will need to be updated?

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Yeah. Thanks for flagging.

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I realize that I've been putting this off because my mental context is totally in the production forecaster right now. I'm going to sign off on this without review, since Logan has already done a thorough review and I don't want to block this further by building a mental context right now.

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