support plugins for third party CWL registry APIs, etc #314
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qiukunlong
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Mar 25, 2017
aa320ec Merge pull request common-workflow-language#342 from common-workflow-language/fix-mystery-package-errors 3c6eaff Update for rename of argparse2cwl to argparse2tool b14404b remove errant jsonldPredicate 7f116da Merge pull request common-workflow-language#339 from common-workflow-language/dockerOutputDirectory 4f65d1f Add test for dockerOutputDirectory option of DockerRequirement. cb1f928 Merge pull request common-workflow-language#335 from common-workflow-language/output-literals d8b6c8f Add tests for file and directory literals in output as produced by expression tool. ee3bb1c Merge pull request common-workflow-language#324 from common-workflow-language/secondaryfiles-array 5e6c2d4 Add NLeSC's Xenon cbe1c8d Merge pull request common-workflow-language#334 from StarvingMarvin/master 8300e43 output ids must start with '#' in draft-2 f87d218 draft-3 test fixes: explicit output for args 8b10319 Fixes for draft-2 tests: adding explicit args output 83ed4b4 Merge remote-tracking branch 'rabix-cwl/master' e0a5e7c Merge pull request common-workflow-language#328 from StarvingMarvin/master d906c4a dir4 test fix 21bdcaf Merge remote-tracking branch 'upstream/master' dee0f4e Disabled checksum check for listing input dir fc4cb0f Added args output and empty.json for null jobs a4950f4 Update tools list 8e1d67c Add Rabix Bunny CI badge 2a5b95e fixing mentions to draft3/4 1356c45 Add test for secondaryFiles with arrays b60125b Single instead of double quotes in doc 179835b Merge pull request common-workflow-language#319 from common-workflow-language/test-cwl-out2 ed40737 Add additional test for cwl.output.json behavior. a217bb6 Merge pull request common-workflow-language#317 from StarvingMarvin/master 8dd69f2 fixing test in v1.0 and v1.1.0-dev1 e831c20 Merge pull request common-workflow-language#314 from common-workflow-language/test-requirements-on-steps 8cad6f1 Add test for requirements/hints on workflow steps. 7679adb Merge pull request common-workflow-language#308 from common-workflow-language/embedded-subworkflow-test 1582677 Tighten up formatting 779c2d4 Add test for embedded subworkflow e22a9c2 Merge pull request common-workflow-language#307 from alaindomissy/patch-3 125cb5f Update UserGuide.yml 99f4f9f Merge pull request common-workflow-language#303 from common-workflow-language/include-stdin-in-docs 5324dbb put stdin shortcut in correct place git-subtree-dir: cwltool/schemas git-subtree-split: aa320ec
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To clarify, this issue is about putting in place a general purpose plugin scheme. |
tetron
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…ts-on-steps Add test for requirements/hints on workflow steps.
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After #201 gets merged,
Starting with
cwltool.resolver:adds support for resolver plugins using the
cwltool.resolverentry pointThe GA4GH tool registry API resolvers in CWL document resolver via GA4GH tool API #201 is refactored to its own package which advertises compatibility using the
cwltool.resolverentry pointOnce the above is working and tested, dependencies will be added to
cwltoolas named extras so that users can install them easier. Example:pip install cwltool[ga4gh_registry, bioshadock]Document this general pattern
Document other parts of
cwltoolthat could be extended with external plugins:The text was updated successfully, but these errors were encountered: