pango designation v1.27

Release notes

3475c5b - Cornelius Roemer, 2024-03-09 17:19:03 +0100 : Designate JN.1.1.6 (S:F456L on JN.1.1 polytomy)
2fba814 - Cornelius Roemer, 2024-03-09 18:37:08 +0100 : Designate JN.1.26 (S:R346T, after C26894T, USA)
4d2ed46 - Cornelius Roemer, 2024-03-09 18:38:47 +0100 : Designate JN.1.27 (S:M153I, after C26894T, C25680T, USA)
46718c5 - Cornelius Roemer, 2024-03-09 18:47:19 +0100 : Designate JN.1.4.4 (S:R346T)
ce0782a - Cornelius Roemer, 2024-03-09 18:50:06 +0100 : Designate JN.1.8.2 (S:R346T)
fd116e9 - Cornelius Roemer, 2024-03-09 18:54:47 +0100 : Designate JN.1.28 (C24034T, A29700G, East Asia/Oceania)
e312db5 - Cornelius Roemer, 2024-03-09 18:57:07 +0100 : Designate JN.1.1.7 (S:S31F)
b586709 - Cornelius Roemer, 2024-03-09 19:03:22 +0100 : Remove non-1243F seqs from JN.1.24
82aa62d - Cornelius Roemer, 2024-03-09 19:08:56 +0100 : Designate JN.1.29 (ORF1a:T3224A, after C2644T, Brazil)
72ac258 - Cornelius Roemer, 2024-03-14 09:03:50 +0100 : Designate JN.1.4.5 (ORF8:S103L)
f144a9b - Cornelius Roemer, 2024-03-14 10:15:40 +0100 : Designate JN.1.18.1 (S:T250N)
e0fc8aa - Cornelius Roemer, 2024-03-14 10:20:23 +0100 : Designate JN.1.30 (G21255T)
0092a7f - Cornelius Roemer, 2024-03-14 10:34:40 +0100 : Fix JN.1.4 designations
c83781e - Cornelius Roemer, 2024-03-14 10:40:34 +0100 : Designate JN.1.31 (ORF3a:V13L, C19186T)
b316ca1 - Cornelius Roemer, 2024-03-14 10:56:06 +0100 : Designate JN.1.16.1 (S:R346T)
f7585ae - Cornelius Roemer, 2024-03-14 11:00:32 +0100 : Designate KS.1 (JN.1.13.1.1, S:F456L)
58f350c - Cornelius Roemer, 2024-03-14 11:06:39 +0100 : Designate JN.1.4.6 (S:T572I, after T18453C)
ecf36b9 - Cornelius Roemer, 2024-03-14 11:25:42 +0100 : Designate JN.1.32 (S:T572I, directly on JN.1 polytomy)
1bf723e - Memorable, 2024-03-14 21:40:11 +0800 : Update lineage_notes.txt
e554b7f - Angie Hinrichs, 2024-03-14 15:52:00 -0700 : Merge pull request #2519 from Memorablea/patch-2
fa7c71d - Angie Hinrichs, 2024-03-15 10:21:39 -0700 : Removing name that matches many different sequences.
8efd327 - Memorable, 2024-03-17 13:19:51 +0800 : Update lineage_notes.txt
cb172ab - Cornelius Roemer, 2024-03-17 15:22:03 +0100 : Designate GE.1.2.2 (S:S408N, ORF1b:A517V, ORF1b:D1899E, ORF7a-ORF8 possibly completed deleted, Kenya)
01f1978 - Cornelius Roemer, 2024-03-17 15:31:14 +0100 : Designate KT.1 (GE.1.2.1.1, S:K77R, US/UK)
7b3ad94 - Cornelius Roemer, 2024-03-17 15:32:17 +0100 : Designate KT.1.1 (C683T, G15957A, USA)
4cdf840 - Cornelius Roemer, 2024-03-17 15:36:09 +0100 : Designate KT.1.2 (ORF1b:N2328S, C583T)
47c066b - Cornelius Roemer, 2024-03-17 16:08:05 +0100 : Designate KP.3 (S:Q493E)
98da9b2 - Cornelius Roemer, 2024-03-17 16:16:27 +0100 : Desigante JN.1.33 (S:A67V, G2782T, C5512T, China)
947fc66 - Cornelius Roemer, 2024-03-17 16:17:50 +0100 : Designate JN.1.34 (S:S704L)
efb6b9f - Cornelius Roemer, 2024-03-17 16:19:42 +0100 : Designate JN.1.35 (S:S680Y, after T18471C, Australia/New Zealand)
99bec76 - Cornelius Roemer, 2024-03-17 16:24:07 +0100 : Designate JN.1.36 (S:Q677H, after A29086T)
76391fc - Federico Gueli, 2024-03-17 17:50:32 +0100 : Update lineage_notes.txt
be72bd5 - Memorable, 2024-03-19 13:26:55 +0800 : Update lineage_notes.txt
1da2694 - Cornelius Roemer, 2024-03-19 14:01:53 +0100 : Designate KP.2.1 (S:Q1201K)
92ae63a - Cornelius Roemer, 2024-03-19 14:03:44 +0100 : Designate KP.2.2 (S:F59L, S:K1266R)
e03042f - Cornelius Roemer, 2024-03-19 15:47:09 +0100 : Designate JN.1.30.1 (S:R346T, after T7789C, India)
f0368ef - Angie Hinrichs, 2024-03-19 15:58:20 -0700 : Merge pull request #2524 from Memorablea/patch-2
48ed0b8 - Angie Hinrichs, 2024-03-19 15:59:47 -0700 : Merge pull request #2526 from FedeGueli/patch-30
429fbed - Angie Hinrichs, 2024-03-19 16:16:57 -0700 : Merge pull request #2527 from Memorablea/patch-3
617afbf - Cornelius Roemer, 2024-03-20 17:00:32 +0100 : Designate JQ.2.1 (S:L455S, South Africa)
b450700 - Cornelius Roemer, 2024-03-25 07:32:02 +0100 : Designate XDD.1.1.1 (S:R346T)
1cda06a - Cornelius Roemer, 2024-03-25 07:51:38 +0100 : Designate KU.1 (JN.1.30.1.1, S:K182Q) and KU.2 (S:F456L)
388d260 - Cornelius Roemer, 2024-03-25 07:55:12 +0100 : Designate JN.1.18.2 (S:F59S)
dc9f270 - Cornelius Roemer, 2024-03-25 08:11:17 +0100 : Designate JN.1.36.1 (S:S680F, South Korea)
b62fdd6 - Cornelius Roemer, 2024-03-25 08:13:13 +0100 : Designate KV.1 (S:S680F)
febf823 - Cornelius Roemer, 2024-03-25 08:15:01 +0100 : Designate JN.1.37 (S:S680F, on polytomy)
d2c609b - Cornelius Roemer, 2024-03-25 08:20:23 +0100 : Designate JN.1.28.1 (ORF1a:P1640L, C19545T, C24370T) and KW.1 (JN.1.28.1.1, S:T572I, Australia)
4c84077 - Cornelius Roemer, 2024-03-25 08:25:21 +0100 : Desigante JN.1.38 (ORF1b:R1736K, USA)
c193ce6 - Cornelius Roemer, 2024-03-25 08:27:30 +0100 : Desigante JN.1.39 (G2782T)
b515b3a - Cornelius Roemer, 2024-03-25 08:33:16 +0100 : Designate JN.1.40 (S:S31P, Mexico)
36cdaa3 - Cornelius Roemer, 2024-03-25 08:37:35 +0100 : Designate JN.1.41 (S:S1252F, on A29086T, USA)
bf6fa8b - Cornelius Roemer, 2024-03-25 08:39:31 +0100 : Designate JN.1.42 (C5581A, South America)
06e2b57 - Cornelius Roemer, 2024-03-25 08:43:34 +0100 : Designate JN.1.43 (A25237G), JN.1.43.1 (C19488T, C29218T, Brazil)
72653ed - Cornelius Roemer, 2024-03-25 08:50:27 +0100 : Designate KP.1.1.1 (S:K182N)
8aa6137 - Cornelius Roemer, 2024-03-25 09:00:54 +0100 : Designate JN.1.44 (ORF6:P57L)
2f4b63c - Federico Gueli, 2024-03-25 13:17:21 +0100 : Update lineage_notes.txt
0c04882 - Cornelius Roemer, 2024-03-26 17:39:36 +0100 : Designate 30 extra JN.1.23
b521ee2 - Cornelius Roemer, 2024-03-26 17:45:04 +0100 : Designate XDU (Recombinant lineage of BA.2.86.1, BA.2.86.1 (breakpoint between 11957-12729), Japan,)
2290342 - Cornelius Roemer, 2024-03-26 17:55:33 +0100 : Designate XDP.1 (S:E1092D, after ORF1a:L397P, ORF1a:H388Y)
0f6d6e1 - Cornelius Roemer, 2024-03-26 18:39:58 +0100 : Designate JN.2.2.1 (S:N487D, Netherlands)
bbeaa01 - Federico Gueli, 2024-03-27 07:34:53 +0100 : Update lineage_notes.txt
c542214 - Federico Gueli, 2024-03-27 10:04:35 +0100 : Update lineage_notes.txt
9e97eb9 - Cornelius Roemer, 2024-03-29 11:22:55 +0100 : Designate JN.1.8.3 (C13821T, C14925T)
5bddf8f - Cornelius Roemer, 2024-03-29 11:26:09 +0100 : Designate KY.1 (JN.1.8.2.1, ORF1a:N3774D, Nigeria)
1cb2994 - Cornelius Roemer, 2024-03-29 11:32:53 +0100 : Designate JN.14 (C29614T, S:S680F, Thailand/Japan)
f68f404 - Cornelius Roemer, 2024-03-29 11:35:59 +0100 : Designate JN.1.45 (G18756T)
0fb7bc5 - Memorable, 2024-03-30 13:44:57 +0800 : Update lineage_notes.txt
b9b6ec7 - Cornelius Roemer, 2024-04-02 14:05:49 +0200 : Designate XDV (XDE, JN.1, XDE, JN.1 (breakpoints between 19326-21608, 27915-28297, 28958-29535), from #2402) with 13 seqs)
30cec9b - Cornelius Roemer, 2024-04-02 14:07:37 +0200 : Designate XDV.1 (S:F456L (T22930A), on C11572T branch)
7d580c8 - Cornelius Roemer, 2024-04-02 14:34:17 +0200 : Designate JN.1.42.1 ( S:F59S)
d96b1ea - Cornelius Roemer, 2024-04-02 14:37:42 +0200 : Designate JN.1.46 (ORF1a:L3116F, T4885C)
82d8358 - Cornelius Roemer, 2024-04-02 14:41:29 +0200 : Designate JN.1.4.7 (ORF3a:G18D)
4a1ca73 - Cornelius Roemer, 2024-04-02 17:12:56 +0200 : Designate KV.2 (JN.1.4.5.2, S:T572I, ORF1a:P971L, C11956T, USA)
71451fa - Angie Hinrichs, 2024-04-02 18:46:44 -0700 : Merge pull request #2533 from FedeGueli/patch-32
07df22c - Angie Hinrichs, 2024-04-02 18:51:32 -0700 : Merge pull request #2535 from FedeGueli/patch-33
81da870 - Cornelius Roemer, 2024-04-03 17:49:04 +0200 : Designate KW.1.1 (S:F456L, ORF1b:R2009K, Australia/Japan)
1343104 - Cornelius Roemer, 2024-04-04 08:50:33 +0200 : Designate KZ.1 (JN.1.1.6 with ORF1b:V1092F), KZ.1.1 (S:R346T), KZ.1.1.1 (S:T572I)
c0fd244 - Cornelius Roemer, 2024-04-04 09:23:31 +0200 : Designate JN.1.7.3 (S:R346T)
1b26492 - Federico Gueli, 2024-04-04 16:05:52 +0200 : Update lineage_notes.txt
cd77b44 - Yat-sing Ng, 2024-04-05 21:40:51 +0800 : Update lineage_notes.txt
0ba3daf - Yat-sing Ng, 2024-04-05 21:43:08 +0800 : Update alias_key.json
e25cc5d - Yat-sing Ng, 2024-04-05 22:07:14 +0800 : Update lineage_notes.txt
d6b3019 - Angie Hinrichs, 2024-04-05 09:00:45 -0700 : Merge pull request #2537 from FedeGueli/patch-31
053a58c - Angie Hinrichs, 2024-04-05 09:01:36 -0700 : Merge pull request #2541 from Memorablea/patch-2
6246629 - Angie Hinrichs, 2024-04-05 09:02:00 -0700 : Merge pull request #2550 from FedeGueli/patch-34
859d2e1 - Angie Hinrichs, 2024-04-05 09:08:04 -0700 : Merge pull request #2551 from Over-There-Is/patch-7
fe1b485 - Yat-sing Ng, 2024-04-06 00:10:55 +0800 : Update lineage_notes.txt
771f02c - Angie Hinrichs, 2024-04-05 09:24:03 -0700 : Merge pull request #2552 from Over-There-Is/patch-8
452cb0a - aviczhl2, 2024-04-06 21:10:59 +0800 : add_1_from_main_31_from_lineage_proposal
158973c - Angie Hinrichs, 2024-04-12 16:09:06 -0700 : Merge pull request #2553 from aviczhl2/master
8fbd0bc - Cornelius Roemer, 2024-04-15 17:31:11 +0200 : Designate KP.4 (JN.1.11.1.4, C6070T, India), KP.4.1 (S:R346T, C19884T), KP.4.2 (S:R346T, S:K187R)
0f3e1f8 - Cornelius Roemer, 2024-04-15 17:35:53 +0200 : Designate KP.1.2 (S:T572I)
b0a0b07 - Cornelius Roemer, 2024-04-15 17:38:25 +0200 : Designate KP.2.3 (S:H146Q, ORF3a:K67N)
9fcb3e6 - Cornelius Roemer, 2024-04-15 18:00:18 +0200 : Designate JN.1.47 (C8074T, C7594T), JN.1.47.1 (S:S221L, USA/Mexico), JN.1.47.2 ( S:T572I, S:R683Q, USA)
52f3337 - Cornelius Roemer, 2024-04-15 18:04:28 +0200 : Designate JN.1.16.2 (C4777T), LA.1 (JN.1.16.2.1, S:R346T), LA.2 (S:R346I)
0c19ec3 - Cornelius Roemer, 2024-04-15 18:09:10 +0200 : Broaden JN.1.1.3 to not require ORF1b:H2388Y
b51c68c - Cornelius Roemer, 2024-04-15 18:12:35 +0200 : Designate JN.1.9.2 (S:R346T), LB.1 (JN.1.9.2.1, S:F456L)
be7e605 - Cornelius Roemer, 2024-04-15 18:15:49 +0200 : Designate JN.1.7.4 ( S:F456L (T22928C))
2a82248 - Cornelius Roemer, 2024-04-15 18:17:37 +0200 : Designate JN.1.24 (S:R346T)
dffbf6a - Cornelius Roemer, 2024-04-15 18:20:07 +0200 : Designate LC.1 (JN.1.1.7.1, S:R346T)
b179fe8 - Cornelius Roemer, 2024-04-15 18:20:52 +0200 : Add space after comma in lineage notes
12e5413 - Cornelius Roemer, 2024-04-15 18:26:00 +0200 : Designate JN.1.32.1 (S:Q183H)
b04426a - Cornelius Roemer, 2024-04-15 18:28:19 +0200 : Designate KW.1.2 ( S:K529T, Australia)
01c35fe - Cornelius Roemer, 2024-04-15 18:29:54 +0200 : Designate JN.1.8.4 (S:G946R)
67f48bf - Cornelius Roemer, 2024-04-15 19:31:39 +0200 : Designate JN.1.48 (G29134T, after T18471C, India) and JN.1.48.1 (S:S60P, S:R346T, S:F456L, after ORF3a:A99V)
a744a47 - Cornelius Roemer, 2024-04-16 05:21:46 +0200 : Fix error in lineages.csv: LB.2 -> LB.1
78063c1 - Federico Gueli, 2024-04-16 09:06:54 +0200 : Update lineage_notes.txt
8f3adea - Cornelius Roemer, 2024-04-16 19:58:29 +0200 : fix: one more LB.2 leftover -> LB.1
f84e7a6 - Angie Hinrichs, 2024-04-16 11:12:13 -0700 : Merge pull request #2561 from FedeGueli/patch-35
83f73f5 - Cornelius Roemer, 2024-04-18 13:30:35 +0200 : Designate XDW (Recombinant lineage of JN.2 (T1030C branch), XDA (breakpoint between 23424-23603), Japan, from sars-cov-2-variants/lineage-proposals#1471)
5a55c86 - Cornelius Roemer, 2024-04-18 13:36:09 +0200 : Designate XDQ.2 (S:N487D, Vietnam)
18a05f9 - Cornelius Roemer, 2024-04-18 13:37:13 +0200 : Desigante XDQ.3 (S:681H, Indonesia)