pango designation v1.31

Release notes

340273e - Doksuri2305, 2024-08-20 13:31:46 +0800 : Update lineage_notes.txt
708a9e9 - Doksuri2305, 2024-08-21 14:43:14 +0800 : Update lineage_notes.txt
f5a0757 - aviczhl2, 2024-08-28 14:54:51 +0800 : add_1_from_main_79_from_secondary
01f3179 - Cornelius Roemer, 2024-09-20 17:34:27 +0200 : fix: Add back some XDV.1 designations (they had reduced to 0)
fba73e7 - Cornelius Roemer, 2024-09-28 19:20:43 +0200 : Designate XEH from #2790
1a23ef0 - Cornelius Roemer, 2024-09-28 19:37:55 +0200 : Designate XEJ
ba3711a - Cornelius Roemer, 2024-09-28 20:05:58 +0200 : Designate XEC.2, XEK
05ebc2e - Cornelius Roemer, 2024-10-19 20:18:37 +0200 : Designate some LF.7 sublineages
160157e - Cornelius Roemer, 2024-10-19 20:42:07 +0200 : Designate LF.7.4, S:T961M
3365724 - Cornelius Roemer, 2024-10-20 14:22:31 +0200 : Designate some JN.1.49 sublineages
0c2adb7 - Cornelius Roemer, 2024-10-20 18:46:20 +0200 : Designate XDV.1.5.1 and NB.1 (XDV.1.5.1.1)
c542eb9 - Cornelius Roemer, 2024-10-20 19:34:30 +0200 : Designate KS.1.1.1 (C2091T, A1674C, spread by Usher due to masking of C2091T) and KS.1.1.2 (ORF1a:L2146F, C19716T, main branch of KS.1.1)
d247018 - Cornelius Roemer, 2024-10-20 19:47:23 +0200 : Designate XEL (Recombinant lineage of KS.1.1.2, JN.1 (breakpoint: 22929-24820), from #2751)
0b02249 - Cornelius Roemer, 2024-10-20 19:55:26 +0200 : Designate NC.1 (KS.1.1.1.1, S:R190S)
bb7b4ed - Cornelius Roemer, 2024-10-20 20:13:00 +0200 : Designate LF.8.1.1 sublineages (ND)
efe8e07 - Cornelius Roemer, 2024-10-20 20:24:26 +0200 : Designate MC.10.1 (435S) and KP.2.2.1 (T22N)
a3d38ca - Cornelius Roemer, 2024-10-20 20:31:54 +0200 : Designate KP.2.25 and sublineages
ffff0c8 - Cornelius Roemer, 2024-10-20 22:18:05 +0200 : Designate some MD.3.1 sublineages
c309913 - Cornelius Roemer, 2024-10-20 22:23:42 +0200 : Add some MD.1 sublineages
81c3b2d - Cornelius Roemer, 2024-10-21 13:29:23 +0200 : Some KP sublineages
87730bf - Federico Gueli, 2024-10-21 15:15:10 +0200 : Update lineage_notes.txt (#2809)
d2a0c5b - Federico Gueli, 2024-10-21 15:16:20 +0200 : Update lineage_notes.txt (#2808)
623a566 - dependabot[bot], 2024-10-21 15:17:17 +0200 : Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows (#2760)
e67b451 - Yat-sing Ng, 2024-10-21 23:28:22 +0800 : Update lineage_notes.txt
986687e - Cornelius Roemer, 2024-10-22 20:43:45 +0200 : Designate KP.2.27 (S:T572I)
f04d7b5 - Cornelius Roemer, 2024-10-22 21:00:23 +0200 : Designate KP.2.2.2, KP.2.38, XEM
556f3a1 - Cornelius Roemer, 2024-10-22 22:53:24 +0200 : Designation of MC.18 (S:T259R was mistake, already existed as MC.14)
6637343 - Cornelius Roemer, 2024-10-23 00:57:09 +0200 : Designate KP.1.1.6, NE.1, XEN
39acabc - Federico Gueli, 2024-10-23 10:34:59 +0200 : KP.1.1.6 added S:N185del, S:F186I as defining
eabf495 - Cornelius Roemer, 2024-10-24 17:31:20 +0200 : Designate NF.1
4744b7a - Cornelius Roemer, 2024-10-24 19:44:48 +0200 : KP.2.2.1 sublineages (NH) and KP.2.3.9 (NG)
608685e - Cornelius Roemer, 2024-10-25 17:41:03 +0200 : Designate JN.1.11.2, NJ.1
b2f9b67 - Cornelius Roemer, 2024-10-25 17:51:42 +0200 : Designate KP.2.3.10 (478T rev) and NK.1 (S:R190S)
9db833c - Cornelius Roemer, 2024-10-25 18:18:45 +0200 : Designate LP.5-7
d393047 - Cornelius Roemer, 2024-10-25 18:45:47 +0200 : Designate NL.1 (LB.1.3.1.1), MU.2(.1), KP.2.3.11
1620c06 - Cornelius Roemer, 2024-10-25 18:56:40 +0200 : Designate KP.3.7
73becf7 - Cornelius Roemer, 2024-10-27 02:11:28 +0100 : Designate KR.1.4, LZ.2.1.1/2
5021628 - Cornelius Roemer, 2024-10-27 04:52:47 +0100 : Designate KP.2.3.12 (#2765) and NM.1 (KP.2.3.4.1)
ef380be - Cornelius Roemer, 2024-10-27 05:01:32 +0100 : Designate LP.8 (S:H445R, S:Q493E, S:F186L, ORF3a:P178L, Singapore/Philippines, from #2811)
528407d - Cornelius Roemer, 2024-10-27 05:07:17 +0100 : Designate LF.7.1.2
e945668 - Cornelius Roemer, 2024-10-27 05:19:22 +0100 : Designate KP.4.2.3/4
cdba04f - Cornelius Roemer, 2024-10-27 14:21:39 +0100 : Fix LP.7.1.2 -> LF.7.1.2
7b20f1b - Federico Gueli, 2024-10-29 22:30:49 +0100 : NL.1 Alias corrected (#2818)
9e167a0 - Angie Hinrichs, 2024-10-30 11:29:34 -0700 : Merge pull request #2741 from Memorablea/patch-4
e9c6e79 - Angie Hinrichs, 2024-10-30 11:43:53 -0700 : Merge pull request #2754 from xz-keg/master
a4d106c - Angie Hinrichs, 2024-10-30 11:47:15 -0700 : Merge pull request #2810 from Over-There-Is/patch-10
a66cfe4 - Angie Hinrichs, 2024-10-30 11:50:56 -0700 : Merge pull request #2814 from FedeGueli/patch-59
b1e238c - Cornelius Roemer, 2024-11-01 10:36:05 +0100 : Designate a bunch of lineages
dd30483 - Cornelius Roemer, 2024-11-05 18:22:50 +0100 : Designate MJs and LF.10
0e2f2c4 - aviczhl2, 2024-11-08 18:49:33 +0800 : add 66 autorefs modified: automated-issue-ref.ipynb modified: autoref/milestone.txt modified: autoref/missing_refs.txt modified: lineage_notes.txt modified: automated-issue-ref.ipynb
218759a - Cornelius Roemer, 2024-11-08 14:28:09 +0100 : Designate LP.8.1 and LP.8.2
d4c311e - Cornelius Roemer, 2024-11-08 15:08:15 +0100 : Designate NL.2-7 and LF.7.1.3
0e147e5 - Angie Hinrichs, 2024-11-08 14:22:54 -0800 : Merge pull request #2824 from xz-keg/master
dd477c4 - Cornelius Roemer, 2024-11-12 19:27:50 +0100 : Designate a bunch of lineages
ad2242f - Cornelius Roemer, 2024-11-12 19:41:25 +0100 : Designating NP.1/2 and XEP
dc17e54 - Cornelius Roemer, 2024-11-12 19:48:17 +0100 : Designate some S:A435S lineages
c822601 - Cornelius Roemer, 2024-11-12 19:56:12 +0100 : Designate XDY.1 and MC.22
d235e07 - Cornelius Roemer, 2024-11-12 21:04:30 +0100 : Designate LP.10(.1), MU.3, NH.4, NQ.1
66f18f2 - Cornelius Roemer, 2024-11-13 12:06:21 +0100 : Make LP.9.1 -> LP.9 as bad quality USA/LA- sequences confused me, they all should have S:H445P
9da7b50 - Cornelius Roemer, 2024-11-13 12:16:15 +0100 : Fix KP.2.3.13 designations
36e8c56 - Cornelius Roemer, 2024-11-13 12:59:02 +0100 : Designate MG.2-3
51c2443 - Cornelius Roemer, 2024-11-14 12:57:29 +0100 : Designate MG.4

pango designation v1.30

Release notes

acce355 - Mydtlwn, 2024-07-28 00:49:47 +0800 : Fix KS.1.1_KS.1.3 alias
13ecbaf - Mydtlwn, 2024-07-28 01:06:58 +0800 : Fix MJ.1 Alias
81eb8b5 - Angie Hinrichs, 2024-07-30 13:51:27 -0700 : Merge pull request #2701 from Mydtlwn/master
0a53c75 - Erin Newcomer, 2024-07-31 12:47:31 -0500 : Update lineage_notes.txt L.4
7de29b2 - Angie Hinrichs, 2024-07-31 11:39:33 -0700 : Merge pull request #2706 from erinpnewcomer/patch-1
c8b9d2d - Cornelius Roemer, 2024-08-07 15:42:31 -0300 : Designate XEC (recombinant of KS.1.1 (JN.1.13.1.1.1) and KP.3.3 (breakpoint 21738-22599), Europe, from #2717)
aac77b1 - Cornelius Roemer, 2024-08-07 15:57:09 -0300 : Designate KP.2.3.5 (S:K535T, A1087G)
4ee31e1 - Cornelius Roemer, 2024-08-07 15:58:25 -0300 : Designate KP.2.3.6 (S:T572I)
138717a - Cornelius Roemer, 2024-08-07 16:05:18 -0300 : Designate LP.1.2 (S:R190S, T18300A, USA), LP.4 (S:T572I, ORF8:A65V)
968a20b - Cornelius Roemer, 2024-08-07 16:10:54 -0300 : Designate LB.1.2.2 (S:T572I, C22075T)
b51c5b0 - Cornelius Roemer, 2024-08-07 16:12:25 -0300 : Designate LB.1.2.3 (S:F175L, ORF1a:I1568F)
01948c2 - Cornelius Roemer, 2024-08-07 16:27:34 -0300 : Designate KP.2.18 (S:T22N, on T22795G branch), KP.2.14.1 (S:T22N)
5543b21 - Federico Gueli, 2024-08-08 08:06:02 +0200 : Update lineage_notes.txt
c64dbc4 - Cornelius Roemer, 2024-08-08 11:41:00 -0300 : Designate MC.2 (KP.3.1.1, S:A845S), and MC.2.1 (S:R237K)
ef5436d - Cornelius Roemer, 2024-08-08 11:44:12 -0300 : Extra KR.4 designations
f9dcaaf - Cornelius Roemer, 2024-08-08 11:46:44 -0300 : Designate KR.1.3 (S:K304Q, S:S60P, Philippines)
4f50432 - Cornelius Roemer, 2024-08-08 15:17:12 -0300 : Designate MP.1 ( S:N487D, Southern Africa), MP.1.1 (S:R346T, S:A348P, Southern Africa)
99f5fa6 - Cornelius Roemer, 2024-08-08 15:21:41 -0300 : Designate JQ.2.1.2 (S:T572I, ORF1b:Q813H, Southern Africa)
3b31d3b - Cornelius Roemer, 2024-08-08 15:38:43 -0300 : Designate MC.3 (KP.3.1.1.3, S:G72R, Spain), MC.4 (KP.3.1.1.4, S:S98F, Spain)
1d153da - Cornelius Roemer, 2024-08-08 15:40:53 -0300 : Designate LB.1.3.3 (S:K182R, from #2723)
74458d8 - Cornelius Roemer, 2024-08-08 15:54:06 -0300 : Designate KP.2.15.1 (S:T572I, from #2711)
76a4024 - Cornelius Roemer, 2024-08-08 16:01:36 -0300 : Designate KP.3.1.7 (S:L84I, from #2709), MQ.1 (JN.1.7.8.1, S:T95I, S:R346T, from #2710), MQ.2 (S:T678I)
5718a44 - Cornelius Roemer, 2024-08-08 16:05:30 -0300 : Designate KP.3.3.4 (ORF1a:I1367L, from #2707)
cd468f9 - Cornelius Roemer, 2024-08-08 16:08:40 -0300 : Designate MR.1 (KP.3.3.4.1, S:S31del, ORF1a:V1236I, from #2704)
2b11a9d - Cornelius Roemer, 2024-08-08 16:19:56 -0300 : Designate MK.3 (S:R346T, S:H445R)
75076cc - Cornelius Roemer, 2024-08-08 16:24:50 -0300 : Designate XED (recombinant of JN.1.4 and LF.1.1.1 (breakpoint 19210-21652), from #2691)
88883f4 - Mydtlwn, 2024-08-09 22:20:25 +0800 : Fix KR.1.3 Alias Error.
58b1468 - Angie Hinrichs, 2024-08-09 11:21:49 -0700 : Merge pull request #2725 from Mydtlwn/master
e4d31e1 - Angie Hinrichs, 2024-08-09 11:23:37 -0700 : Merge pull request #2719 from FedeGueli/patch-54
2c6deaf - Cornelius Roemer, 2024-08-12 19:51:48 +0200 : Designate LZ.2 (S:F456L (T22928C), ORF1a:K1226E, China)
9b9cd84 - Cornelius Roemer, 2024-08-14 23:29:59 +0200 : Designate XEC.1 (S:K182R, ORF1a:L4182F, France/Ireland/Canada)
beb1f1f - Cornelius Roemer, 2024-08-15 00:19:29 +0200 : Designate MS.1 (JN.1.42.2.1, S:31del, ORF1a:E940G, USA/Guatemala)
699fb71 - Cornelius Roemer, 2024-08-15 00:51:00 +0200 : Designate MA.1.1, MA.1.1.1, JN.1.18.8, KU.2.1, KU.2.2, JN.1.59.1
f7249dc - Cornelius Roemer, 2024-08-15 01:24:31 +0200 : Designate LU.2.1, LU.2.1.1, JN.1.16.4
ac17fb3 - Cornelius Roemer, 2024-08-15 01:55:32 +0200 : Designate MT.1 (JN.1.16.4.1, S:S31P, N:P279S)
8b27ff6 - Cornelius Roemer, 2024-08-15 14:20:30 +0200 : Designate KP.2.19, LF.6
43d7733 - Cornelius Roemer, 2024-08-15 16:16:07 +0200 : Designate LF.7, LR.3, XDV.1.1-1.6
7fb8081 - Cornelius Roemer, 2024-08-15 16:22:07 +0200 : Designate MU.1 (KP.1.1.5.1, S:T572I)
5fc6ef4 - Cornelius Roemer, 2024-08-15 18:07:37 +0200 : Redesignate KP.2.14.1 as KP.2.14: there's no evidence for any good sequences not having S:T22N
be8ae9d - Cornelius Roemer, 2024-08-15 18:18:50 +0200 : Clean up MC.2 and MC.2.1
0c67ac2 - Cornelius Roemer, 2024-08-15 18:19:54 +0200 : Designate extra KP.2.14
33300c5 - Cornelius Roemer, 2024-08-15 18:28:10 +0200 : Designate JN.1.4.9 (S:F456L, on branch with JN.1.4.2/5/6 (T18453C), from #2577)
ee0a75b - Cornelius Roemer, 2024-08-15 18:31:47 +0200 : Designate JN.1.38.1 from #2475
610a2f5 - Cornelius Roemer, 2024-08-15 19:38:43 +0200 : Designate MC.5-11.1
0730f27 - Cornelius Roemer, 2024-08-15 19:53:08 +0200 : Designate MC.12-MC.15
096bcaf - Cornelius Roemer, 2024-08-15 20:04:06 +0200 : Designate MC.16, extra LB.1.2.2
a771fcc - Cornelius Roemer, 2024-08-15 20:13:25 +0200 : Designate MB.1.1.1, MV.1
2cc1b3e - Cornelius Roemer, 2024-08-15 20:13:52 +0200 : Add MV alias (MB.1.1.1 = JN.1.1.49.1.1.1)
fa75b1d - Cornelius Roemer, 2024-08-15 20:19:29 +0200 : Designate KP.2.20 and KP.2.20.1
477df9d - Cornelius Roemer, 2024-08-15 20:41:35 +0200 : Designate JN.1.67, JN.1.67.1
2b4bc18 - Cornelius Roemer, 2024-08-15 20:44:45 +0200 : Designate LB.1.4.2, XEF
8d24140 - Mydtlwn, 2024-08-16 06:50:23 +0800 : Fix MC.16,MB.1.1.1ï¼MV.1 Alias Error.
2b3570d - Angie Hinrichs, 2024-08-15 16:47:01 -0700 : Merge pull request #2734 from Mydtlwn/master
47ff6d4 - Federico Gueli, 2024-08-16 02:38:54 +0200 : Update lineage_notes.txt
6170a64 - Cornelius Roemer, 2024-08-16 14:25:39 +0200 : Add KP.2.21
44e1946 - Cornelius Roemer, 2024-08-16 14:43:40 +0200 : Designate KP.2.22-KP.2.26
01db1de - Cornelius Roemer, 2024-08-16 14:57:36 +0200 : Designate KR.4.1 and KS.1.4
d64d652 - Cornelius Roemer, 2024-08-16 15:17:17 +0200 : Rename KP.2.22 to KP.6, rename KP.2.26 to KP.2.22
5d260b1 - Cornelius Roemer, 2024-08-16 15:19:23 +0200 : KP.2.24 is actually just part of KP.2.15, thanks @aviczhl2
cc8281f - Cornelius Roemer, 2024-08-16 15:20:13 +0200 : Rename KP.2.24 to KP.2.24
8288241 - Cornelius Roemer, 2024-08-16 15:42:08 +0200 : Designate KP.2.3.7, redesignate KP.2.21 as XEG
65e5a0b - Cornelius Roemer, 2024-08-16 15:46:53 +0200 : Designate MW.1 (KP.2.3.7 + S:Q239R)
7b1a8c3 - Cornelius Roemer, 2024-08-16 15:48:57 +0200 : Add KP.2.23 designations
c608418 - Cornelius Roemer, 2024-08-16 16:05:44 +0200 : MC.12 designations
5f66271 - Cornelius Roemer, 2024-08-16 16:54:21 +0200 : Designate LF.8, LF.8.1, LF.8.1.1 (S:M153I, S:S31F, S:T22N)
49d9da3 - Cornelius Roemer, 2024-08-16 17:00:39 +0200 : Fill the XEE gap by reassigning XEG, thanks @Over-There-Is
56fe08a - Cornelius Roemer, 2024-08-16 17:30:07 +0200 : Designate MC.17, LW.1.1, LW.1.2, JN.1.16.5
6c26cbf - Cornelius Roemer, 2024-08-16 18:04:03 +0200 : Fix: MC.17 -> KP.3.6
4dbd3a0 - Cornelius Roemer, 2024-08-16 20:46:50 +0200 : Designate LB.1.9 (S:K478T (reversion), G20931T, T29194C, C15960T, India)
a22c382 - Cornelius Roemer, 2024-08-16 20:50:42 +0200 : Designate KP.3.1.8, MY.1
4e445ec - Cornelius Roemer, 2024-08-16 21:18:05 +0200 : Fix alias file, thanks @joshuailevy
a373e04 - Angie Hinrichs, 2024-08-16 14:04:52 -0700 : Merge pull request #2735 from FedeGueli/patch-55
6c1cbb8 - Cornelius Roemer, 2024-08-17 11:52:22 +0200 : XDV.1.7-11, XDR.1.1-2, XEG
0b729a3 - Cornelius Roemer, 2024-08-20 19:15:56 +0200 : Designate LU.2.2 ( S:Q677P, ORF1a:T1000I, Ecuador)
e79381f - Cornelius Roemer, 2024-08-20 19:22:46 +0200 : Designate extra XEC and XEC.1
8536270 - Cornelius Roemer, 2024-08-24 18:59:19 +0200 : Designate LB.1.4.3
20f4b0a - Cornelius Roemer, 2024-08-27 07:31:48 +0200 : Designate LF.9 (S:S60P), LF.9.1 (S:N185D)
0d17efb - Cornelius Roemer, 2024-09-05 14:51:24 +0200 : Designate XDV.1.7.1 ( S:T22N, S:V62F) and XDV.1.9.1 (S:A435S)
6831ab2 - Cornelius Roemer, 2024-09-05 14:55:35 +0200 : Designate LZ.2.1 (ORF10:Q29*)
24c473d - Cornelius Roemer, 2024-09-05 14:59:42 +0200 : Designate MZ.1 (Alias of JN.1.67.1.1, S:S31F)

pango designation v1.29

Release notes

4401ad4 - Yat-sing Ng, 2024-05-20 17:47:39 +0800 : Update lineage_notes.txt
9fb5916 - Yat-sing Ng, 2024-05-21 23:18:03 +0800 : Update lineage_notes.txt
f4ec864 - Yat-sing Ng, 2024-05-21 23:19:39 +0800 : Update lineage_notes.txt
1fea9d3 - Federico Gueli, 2024-06-17 14:27:18 +0200 : Update lineage_notes.txt
60eb417 - Cornelius Roemer, 2024-06-29 11:24:39 +0200 : Designate XDD.3 (S:T572I, S:F456L (T22928C), G12268A, T17574G, France/Europe)
3c64f3c - Cornelius Roemer, 2024-06-29 11:33:17 +0200 : Extra XDY designations
b0a4a61 - Cornelius Roemer, 2024-06-29 11:50:29 +0200 : Designate LF.3.1.1 (S:L1143F, USA-CO)
ccb46f6 - Cornelius Roemer, 2024-06-29 11:54:36 +0200 : Designate LB.1.3.1 (S:445P, N:T379I)
40ed9bf - Cornelius Roemer, 2024-06-29 12:22:49 +0200 : Designate JN.1.18.6 (S:F456L (T22928C), S:F59S), KP.2.3.4 (S:445P, A15759G, C27804T)
3cdd87c - Cornelius Roemer, 2024-06-29 12:26:45 +0200 : Designate LY.1 (JN.1.18.6, S:F65Y, S:Q183P), LY.2 (S:Q183H, C2143T)
8349a38 - Cornelius Roemer, 2024-06-29 12:29:36 +0200 : Designate JN.1.18.7 (S:F59S, S:D1260Y)
c0e97bd - Cornelius Roemer, 2024-06-29 12:39:34 +0200 : Designate LZ.1 (S:F456L (T22930A), N:A152T, ORF1a:I740V), LZ.1.1 (S:P217S, S:N1125S)
17a53f0 - Cornelius Roemer, 2024-06-29 12:50:07 +0200 : Designate MA.1 (JN.1.18.3.1, S:R190S, S:31del)
c714b71 - Cornelius Roemer, 2024-06-29 12:55:42 +0200 : Designate MB.1 (JN.1.49.1, S:F456V (T22928G), S:S31F), MB.1.1 (S:ST22N, S:K182N)
18f3ef0 - Cornelius Roemer, 2024-06-29 13:04:53 +0200 : Designate LP.1.1 (S:S255F, Dominican Republic)
6c579b8 - Cornelius Roemer, 2024-06-29 13:32:56 +0200 : Designate LF.4 (JN.1.16.1, N:R385K, ORF1a:T4368I), LF.4.1 (S:31del, ORF1a:G519S, ORF8:Q29*)
90185bf - Cornelius Roemer, 2024-06-29 13:38:23 +0200 : Designate KP.3.3.1 (S:T547K, ORF3a:F87S)
cd1347a - Cornelius Roemer, 2024-06-29 13:40:46 +0200 : Designate MC.1 (KP.3.1.1, S:T572I)
d0ce1fc - Federico Gueli, 2024-06-30 00:21:53 +0200 : Update lineage_notes.txt
bd5e992 - Federico Gueli, 2024-06-30 00:45:59 +0200 : Update lineage_notes.txt
fd8a71a - Mydtlwn, 2024-06-30 09:37:32 +0800 : Update lineage_notes.txt
4699799 - Cornelius Roemer, 2024-07-01 16:36:15 +0200 : Designate LU.2 (S:R346T, after T20865C), designate extra JN.1.15.1 (S:F456L, ORF3a:R122S, Ecuador)
c0c9b1b - Cornelius Roemer, 2024-07-01 16:53:06 +0200 : Designate JN.1.64 (ORF1a:N2147S (A6705G)), JN.1.64.1 (S:R346T), MD.1 (JN.1.64.1.1, S:F456L (T22930A)) ...
611a5ca - Federico Gueli, 2024-07-02 00:46:41 +0200 : Update lineage_notes.txt
eea38e5 - aviczhl2, 2024-07-03 15:53:00 +0800 : add_1_from_main_85_from_lineage_proposals
088a24e - Cornelius Roemer, 2024-07-03 14:43:35 +0200 : Designate LK.2 (JN.1.7.3.2, S:R346T after ORF1a:H3395Y), LK.2.1 (S:S455A, S:T547K, Central America)
4624801 - Cornelius Roemer, 2024-07-03 15:21:21 +0200 : Designate JN.1.7.8 (S:F456L (22930A), S:185-189del, N:365L, Central America)
3bd6f7c - Cornelius Roemer, 2024-07-03 15:25:53 +0200 : Designate JN.1.50.2 (ORF1a:N1540S (A4884G, T4885C)), ME.1 (JN.1.50.2.1, S:R346K)
4cdd3ac - Cornelius Roemer, 2024-07-10 09:53:08 +0200 : LF.5 (JN.1.16.1.5, S:T33A, S:N185D, C28660T)
3c53256 - Cornelius Roemer, 2024-07-10 09:57:25 +0200 : JN.1.48.3 Alias of B.1.1.529.2.86.1.1.48.3, S:60P, S:R346T, S:F456L, ORF3a:S60F, ORF1a:T1761I, on T3913A, C8092T branch, South Africa
96fbeac - Cornelius Roemer, 2024-07-10 09:59:48 +0200 : Remove C19716T from KS.1.1 requirements, add extra designations
ea75ab8 - Cornelius Roemer, 2024-07-10 10:01:23 +0200 : KS.1.3 Alias of B.1.1.529.2.86.1.1.13.1.3, S:V642A, Dominican Republic
bffb637 - Cornelius Roemer, 2024-07-10 10:05:46 +0200 : Designate JN.1.65 Alias of B.1.1.529.2.86.1.1.65, S:T572I, after T23629C, G25647T, A5053G, Spain
05535cf - Cornelius Roemer, 2024-07-10 10:10:10 +0200 : Designate JN.1.65.1 Alias of B.1.1.529.2.86.1.1.65.1, S:F456L (22928C), A10420G, C5884T, C29149T, C20483T, Spain
f8ed498 - Cornelius Roemer, 2024-07-10 10:12:18 +0200 : Designate MF.1 Alias of B.1.1.529.2.86.1.1.65.1.1, S:R346T, T21673C, pre-22981T
0720b77 - Cornelius Roemer, 2024-07-10 10:14:29 +0200 : Designate MF.2 Alias of B.1.1.529.2.86.1.1.65.1.2, S:S60P, S:W64L
7125e60 - Cornelius Roemer, 2024-07-10 10:18:18 +0200 : Designate KP.3.3.2 Alias of B.1.1.529.2.86.1.1.11.1.3.3.2, S:A435S, ORF1a:N4134T, England/Canada
f95ef96 - Cornelius Roemer, 2024-07-10 10:46:01 +0200 : Designate MG.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.1.1, S:T572I, S:679N, ORF1a:V3091I
123e055 - Cornelius Roemer, 2024-07-10 10:47:51 +0200 : Designate KP.4.2.3 Alias of B.1.1.529.2.86.1.1.11.1.4.2.3, S:G35R, ORF1a:G519S, ORF1a:I2227V
641e5fc - Cornelius Roemer, 2024-07-10 10:49:57 +0200 : Designate KP.2.17 (Alias of B.1.1.529.2.86.1.1.11.1.2.17, S:G35R, C23758T, C7765T, T14418C, Singapore)
870c80a - Federico Gueli, 2024-07-10 11:09:17 +0200 : Update lineage_notes.txt
0aa996e - Cornelius Roemer, 2024-07-10 14:21:22 +0200 : Designate LB.1.3.2 (C25413T), MH.1 (Alias of B.1.1.529.2.86.1.1.9.2.1.3.2.1, S:T572I)
05eee64 - Cornelius Roemer, 2024-07-10 14:36:05 +0200 : LB.1.8 (ORF1a:I785V)
cf8af79 - Cornelius Roemer, 2024-07-10 14:41:11 +0200 : JN.1.7.9 (G347A, C1057T, C7834T, S:F456L (22930A))
d7383d5 - Cornelius Roemer, 2024-07-10 14:51:39 +0200 : Extra designations JN.1.7.8: currently Usher has this wrongly annotated
b4b0980 - Cornelius Roemer, 2024-07-10 14:59:06 +0200 : Designate MJ.1 (JN.1.29.1.1, S:R346T, S:S31P, ORF1a:E2070K)
569d1c3 - Cornelius Roemer, 2024-07-12 12:26:16 +0200 : KP.3.1.6, MK.1 (S:31F), MK.2 (S:D745G)
1484571 - Cornelius Roemer, 2024-07-12 12:27:53 +0200 : Extra MK.1 designations
4438f33 - Cornelius Roemer, 2024-07-12 12:34:44 +0200 : Designate KP.3.4 (ORF3a:L73F, C25521T, Asia) and KP.3.4.1 ( S:S31F, N:A134V, ORF1a:E1192K)
1e6f996 - Cornelius Roemer, 2024-07-12 12:41:08 +0200 : Designate KP.3.3.3 (G9424T, Japan/Canada), ML.1 (S:681H), ML.2 (S:Q677H)
5b1cc1b - Cornelius Roemer, 2024-07-12 12:48:24 +0200 : MM.1 (KP.3.1.4, S:S680P) and MM.2 (KP.3.1.4, S:G35R, S:N185D)
3ff65be - Cornelius Roemer, 2024-07-12 13:14:59 +0200 : Designate JN.1.66 (S:H445P, S:F456L (T22930A), S:T1117I, ORF1a:L2146F, ORF3a:L106F, Iceland/Sweden)
98c767a - Cornelius Roemer, 2024-07-12 14:47:20 +0200 : Designate MN.1 (JN.1.18.7, S:D80Y, S:P174S, S:S689N, England/Wales)
1216c06 - Cornelius Roemer, 2024-07-12 14:50:22 +0200 : Designate KP.3.5 (S:G213E)
4b2f237 - Cornelius Roemer, 2024-07-13 10:56:12 +0200 : Designate LB.1.4.1 ( S:R190S)
441771d - Cornelius Roemer, 2024-07-13 11:00:13 +0200 : LB.1.7 sublineages with N148T, S680P, R34C, respectively
6fce448 - Federico Gueli, 2024-07-22 18:53:28 +0200 : Update lineage_notes.txt
87b96ea - Angie Hinrichs, 2024-07-25 15:45:40 -0700 : Merge pull request #2658 from FedeGueli/patch-46
5112a51 - Angie Hinrichs, 2024-07-25 15:46:04 -0700 : Merge pull request #2672 from FedeGueli/patch-48
f862388 - Angie Hinrichs, 2024-07-25 15:48:58 -0700 : Merge pull request #2674 from FedeGueli/patch-50
e5b8900 - Angie Hinrichs, 2024-07-25 15:50:41 -0700 : Merge pull request #2675 from Mydtlwn/master
884bf46 - Angie Hinrichs, 2024-07-25 15:52:11 -0700 : Merge pull request #2678 from FedeGueli/patch-51
3f373ef - Angie Hinrichs, 2024-07-25 16:00:35 -0700 : Merge pull request #2683 from aviczhl2/master
3146f63 - Angie Hinrichs, 2024-07-25 16:03:29 -0700 : Merge pull request #2690 from FedeGueli/patch-52
33853e3 - Angie Hinrichs, 2024-07-25 16:05:07 -0700 : Merge pull request #2695 from FedeGueli/patch-53
ac5f002 - Angie Hinrichs, 2024-07-25 16:25:54 -0700 : Merge pull request #2597 from Over-There-Is/patch-9

pango designation v1.28

Release notes

edbc0d0 - Cornelius Roemer, 2024-05-01 19:10:52 +0200 : Extra JN.1 designations (there were only 2 left)
5ea87bc - Cornelius Roemer, 2024-05-15 18:26:53 +0200 : Designate XDQ.1.1 (S:S60P, C1594T, Japan)
8008fdb - Cornelius Roemer, 2024-05-15 18:33:26 +0200 : Designate XDK.1.1 (S:K182R, S:E213G, India) and XDK.1.2 (S:F456L)
541e8ec - Cornelius Roemer, 2024-05-15 18:41:58 +0200 : Designate XDK.2 (S:K679R, T4996A, C11173T, A23598G, C27297T) and XDK.3 (S:F456L, ORF1a:F3397L)
acd0f55 - Cornelius Roemer, 2024-05-15 18:45:03 +0200 : Designate XDR.1 (S:F59S, G6077T, A14031G, C26801T, Brazil/Peru)
46b2f54 - Cornelius Roemer, 2024-05-15 20:44:52 +0200 : Designate KP.2.4 (S:T250N)
9f63e5c - Cornelius Roemer, 2024-05-15 20:45:45 +0200 : Designate KP.2.5 (S:N185D)
2d7a88d - Cornelius Roemer, 2024-05-15 20:47:34 +0200 : Designate KP.2.6 (S:W64R), KP.2.7 (S:S31F)
3f2cd1e - Cornelius Roemer, 2024-05-15 20:49:59 +0200 : Designate KP.2.3.1 (S:A475V)
0161674 - Cornelius Roemer, 2024-05-15 20:51:11 +0200 : Designate KP.4.2.1 (S:S31F)
e91d285 - Cornelius Roemer, 2024-05-15 20:52:11 +0200 : Designate KP.2.8 (S:S60P)
46a6f7e - Cornelius Roemer, 2024-05-15 20:53:29 +0200 : Designate KP.2.9 (S:T572I)
0c57996 - Cornelius Roemer, 2024-05-15 20:54:40 +0200 : Designate KP.2.10 (S:F59S, Singapore)
b868224 - Cornelius Roemer, 2024-05-15 20:56:41 +0200 : Designate KP.2.11 (S:F56V, ORF1a:T2093I, England)
426e156 - Cornelius Roemer, 2024-05-15 21:02:20 +0200 : Designate KP.2.12 and LD.1 (JN.1.48.1.1, S:T572I)
622c0a2 - Cornelius Roemer, 2024-05-15 21:42:30 +0200 : Designate LE.1 (JN.1.4.7.1, S:R346T), KP.1.1.2 (S:P1162S, T2152C), JN.1.48.2 (S:R346T, ORF1a:A427V, A3829G, India)
47360ae - Cornelius Roemer, 2024-05-15 21:44:14 +0200 : Designate LE.1.1 (S:F456V), LE.1.2 (S:K304N)
aaf738f - Cornelius Roemer, 2024-05-15 21:47:19 +0200 : Designate LE.2 (S:R346S, C7423T)
e842705 - Cornelius Roemer, 2024-05-15 22:11:58 +0200 : Designate LF.1 (JN.1.16.1, ORF1a:A1268T, ORF1a:S2103F)
5688ef9 - Cornelius Roemer, 2024-05-15 22:12:53 +0200 : Designate LF.1.1 (S:P1263L)
5d5d81e - Cornelius Roemer, 2024-05-15 22:22:54 +0200 : Designate JN.1.42.2 (S:R346T, Peru)
a11ab22 - Cornelius Roemer, 2024-05-15 22:25:34 +0200 : Designate JN.1.49 (ORF3a:T89I, India)
bd87238 - Cornelius Roemer, 2024-05-15 22:26:45 +0200 : Designate JN.1.49.1 (S:R346T)
3f31249 - Cornelius Roemer, 2024-05-15 22:27:39 +0200 : Designate JN.1.49 (S:F456L)
9ef6dbb - Cornelius Roemer, 2024-05-15 22:30:09 +0200 : Designate KW.1.1.1 (S:T95S, Australia)
bd06dd4 - Cornelius Roemer, 2024-05-15 22:31:46 +0200 : Designate LG.1 (KW.1.1.1.1, S:R346T)
416a561 - Cornelius Roemer, 2024-05-15 22:43:34 +0200 : Designate JN.1.39.1 (S:R346T, S:F456L, C21034T, T25631C, A16011G, T6913C)
c226ef7 - Federico Gueli, 2024-05-16 00:53:36 +0200 : Update lineage_notes.txt
dbfae34 - Cornelius Roemer, 2024-05-16 11:08:57 +0200 : Designate KP.5 (S:T572I), JN.1.39.2 (S:R346T, T111C)
ce08dba - Cornelius Roemer, 2024-05-16 11:11:29 +0200 : Designate KP.3.1 (G15372T, A19722G)
6412249 - Cornelius Roemer, 2024-05-16 11:13:15 +0200 : Add additional KP.3 designations for stability
7ff7747 - Cornelius Roemer, 2024-05-16 11:15:16 +0200 : Designate KP.3.2 (A2611C, C22858T)
02f5669 - Cornelius Roemer, 2024-05-16 11:24:52 +0200 : Designate KP.3.3 (S:R204P)
19d3f9c - Cornelius Roemer, 2024-05-16 12:56:16 +0200 : Redesignate JN.1.33 as JN.1.39.3 after closer analysis
6685c75 - Cornelius Roemer, 2024-05-16 13:36:55 +0200 : Designate JN.3.3 (A5641G, C14478T, C21676T), JN.17 (C12781T, Japan), JN.16 (ORF3a:T229I, Japan), JN.15 (C24319T, Japan)
79d6afb - Cornelius Roemer, 2024-05-16 13:39:38 +0200 : Designate JN.11.1 (S:L455S)
0674de3 - Cornelius Roemer, 2024-05-16 13:42:46 +0200 : Designate BA.2.86.6 (C9226T)
d60bc5e - Cornelius Roemer, 2024-05-16 13:44:03 +0200 : Designate JN.18 (T11614C)
1ff69c9 - Cornelius Roemer, 2024-05-16 13:47:42 +0200 : Designate JQ.2.1.1 (S:F456L, South Africa)
886efd2 - Cornelius Roemer, 2024-05-16 13:50:00 +0200 : Designate JN.19 (A14601G, Japan)
61c49fc - Federico Gueli, 2024-05-16 18:01:51 +0200 : Update lineage_notes.txt
c8369c4 - Mydtlwn, 2024-05-17 07:31:36 +0800 : Update lineage_notes.txt
5191300 - Cornelius Roemer, 2024-05-17 18:47:20 +0200 : Designate JN.1.1.8 (S:F456L (22930A), S:H445P, ORF1a:S2083I, C850T)
c0d3b2a - Cornelius Roemer, 2024-05-17 19:04:59 +0200 : Designate KP.2.13 (S:K478E, N:P6T, C9565T, C24553T, USA/Canada)
935a255 - Cornelius Roemer, 2024-05-18 02:20:17 +0200 : Designate JN.1.50 (S:H445P,S:F456L, S:A67V, S:L249F, Europe)
ddb5af3 - Federico Gueli, 2024-05-18 09:38:12 +0200 : Update lineage_notes.txt
7cc2859 - Angie Hinrichs, 2024-05-23 11:04:13 -0700 : Merge pull request #2590 from FedeGueli/patch-36
8b17072 - Angie Hinrichs, 2024-05-23 11:04:43 -0700 : Merge pull request #2592 from FedeGueli/patch-37
22b011a - Angie Hinrichs, 2024-05-23 11:06:17 -0700 : Merge pull request #2593 from Mydtlwn/master
0969d26 - Angie Hinrichs, 2024-05-23 11:07:25 -0700 : Merge pull request #2594 from FedeGueli/patch-38
fc4ba5c - Cornelius Roemer, 2024-05-28 00:48:25 +0200 : Designate JN.1.23.1 (S:V1264L, S:N137K, Brazil)
d9996a8 - Cornelius Roemer, 2024-05-28 00:50:11 +0200 : Designate JN.1.29.1 (S:F456L)
978a25a - Cornelius Roemer, 2024-05-28 01:00:08 +0200 : Designate JN.1.18.3 (S:F456V)
cdf43cc - Cornelius Roemer, 2024-05-28 01:11:54 +0200 : Designate JN.1.18.4 (S:F456L (T22930G), ORF6:I60T, T23036C, Ghana)
95b07a7 - Cornelius Roemer, 2024-05-28 01:13:20 +0200 : Designate LH.1 (S:K182I)
9bc4a49 - Cornelius Roemer, 2024-05-28 01:15:19 +0200 : Designate LH.2 (S:I197V, S:P251H)
95b07a7 - Cornelius Roemer, 2024-05-28 01:13:20 +0200 : Designate LH.1 (S:K182I)
9bc4a49 - Cornelius Roemer, 2024-05-28 01:15:19 +0200 : Designate LH.2 (S:I197V, S:P251H)
3a035bd - Cornelius Roemer, 2024-05-28 01:17:48 +0200 : Designate KP.1.1.3 (C4999T, many with S:S31del)
7b9dd23 - Cornelius Roemer, 2024-05-28 01:19:46 +0200 : Designaet KP.3.1.1 (ORF1a:S4286C, C12616T, S:S31del, Spain)
f08b13f - Cornelius Roemer, 2024-05-28 01:22:05 +0200 : Designate KP.2.14 (S:G184V, S:S31F)
528133e - Cornelius Roemer, 2024-05-28 01:25:11 +0200 : Designate JN.1.51 (C4795T)
ffbe421 - Cornelius Roemer, 2024-05-28 01:27:08 +0200 : Designate JN.1.51.1 (S:F456L)
27d365b - Cornelius Roemer, 2024-05-28 01:28:34 +0200 : Designate LJ.1 (JN.1.51.1.1, S:T22N)
544be2a - Cornelius Roemer, 2024-05-28 01:31:22 +0200 : Designate LF.2 (ORF1a:K247R, ORF3a:Y184H, many with S:S31del)
c43f2f8 - Cornelius Roemer, 2024-05-28 01:33:12 +0200 : Add extra KP.3.1.1 designations
dce8b07 - Cornelius Roemer, 2024-05-28 01:36:28 +0200 : Designate JN.1.52 (ORF1a:K3353R)
b420df2 - Cornelius Roemer, 2024-05-28 01:40:18 +0200 : Designate JN.1.7.5 (ORF1a:H3395Y)
922795c - Cornelius Roemer, 2024-05-28 01:42:05 +0200 : Designate LK.1 (JN.1.7.5.1, S:445P, ORF1a:R1170C, USA/Canada)
06fd164 - Cornelius Roemer, 2024-05-28 01:44:08 +0200 : Designate JN.1.50.1 (S:R346T)
425d5a7 - Cornelius Roemer, 2024-05-28 01:46:34 +0200 : Designate LF.3 (ORF1a:A4285V, Peru)
aa7919a - Cornelius Roemer, 2024-05-28 01:49:49 +0200 : Designate KP.4.2.2 (S:F59I)
480f4d9 - Cornelius Roemer, 2024-05-28 01:59:36 +0200 : Designate XDK.4 (C25626T), XDK.4.1 (S:F456L, France/Luxembourg)
f6c8c34 - Cornelius Roemer, 2024-05-28 02:01:27 +0200 : Designate XDK.5 (S:F456L, C22388T, Spain)
8bd6644 - Cornelius Roemer, 2024-05-28 02:03:51 +0200 : Designate XDK.6 (S:F456L, S:R237K, S:Q1201K, England)
7a7a727 - Cornelius Roemer, 2024-05-28 02:09:25 +0200 : Add extra JN.1.48.1 designations
891b587 - Cornelius Roemer, 2024-05-28 02:12:58 +0200 : Designate LL.1 (JN.1.4.2.1, S:F456L (T22930A), S:S680F, USA)
26a96ed - Cornelius Roemer, 2024-05-28 02:18:56 +0200 : Designate LM.1 (JN.1.25.1.1, S:F456L)
c1b4638 - Cornelius Roemer, 2024-05-28 02:21:17 +0200 : Designate KS.1.1 (S:T22N)
6f035c5 - Cornelius Roemer, 2024-05-28 02:41:55 +0200 : Designate JN.1.53 (C15720T, Senegal)
ee88d98 - Cornelius Roemer, 2024-05-28 02:44:16 +0200 : Designate JN.1.53.1 (C583T)
fbfc41e - Cornelius Roemer, 2024-05-28 02:46:40 +0200 : Designate LN.1 (JN.1.53.1.1, S:R346T), LN.1.1 (S:F456L, S:478I)
d4897da - Cornelius Roemer, 2024-05-28 02:50:50 +0200 : Designate JN.1.54 (A9085G), JN.1.54.1 (S:F456L, S:V407I, Spain)
73bdba2 - Federico Gueli, 2024-05-28 09:50:14 +0200 : Update lineage_notes.txt
1863b57 - Federico Gueli, 2024-05-28 11:02:42 +0200 : Update lineage_notes.txt
09a29cd - Federico Gueli, 2024-05-28 11:19:46 +0200 : Update lineage_notes.txt
924ed4e - Federico Gueli, 2024-05-28 12:22:39 +0200 : Update lineage_notes.txt
5951c04 - Cornelius Roemer, 2024-05-28 17:56:47 +0200 : Fix missing strains for JN.1.7.5
9d95c71 - Cornelius Roemer, 2024-05-28 19:44:30 +0200 : Fix wrong designation of LK.1's
b64ef5d - Cornelius Roemer, 2024-05-29 21:20:29 +0200 : Designate KP.3.4 (S:W258R)
7beae7d - Cornelius Roemer, 2024-05-29 21:22:51 +0200 : Designate KP.3.2.1 (S:A263V, Australia/Singapore)
0d3b395 - J. Steen Hoyer, 2024-05-30 13:15:28 -0400 : Replace broken pango.network links with archive.org versions
1cd2473 - Angie Hinrichs, 2024-05-30 10:36:10 -0700 : Merge pull request #2626 from jshoyer/master
197106b - Cornelius Roemer, 2024-05-30 19:51:55 +0200 : Designate KP.2.15 (A10861G, S:31del, USA/Canada)
63b5972 - Cornelius Roemer, 2024-05-30 22:16:59 +0200 : Designate KR.2 (S:F456V, L176F, USA/Canada)
358827b - Cornelius Roemer, 2024-05-30 22:23:41 +0200 : Designate KR.1.1, KR.1.2, KR.3, KR.4
e2a747c - Cornelius Roemer, 2024-05-30 22:25:51 +0200 : Designate KR.5 (ORF1a:L642F, ORF1a:T2087I, Brazil)
9facdf9 - Cornelius Roemer, 2024-05-30 22:38:01 +0200 : Designate KS.1.2, JN.1.55(.1,.2)
aa8f0d8 - Cornelius Roemer, 2024-05-30 22:48:15 +0200 : Redesignate KP.3.4 as KP.3.2.2 (dropout of single sequence causes misplacement on tree)
ba51d8a - Cornelius Roemer, 2024-05-31 10:29:39 +0200 : Designate JN.1.56 (ORF3a:K399R), JN.1.56.1 (S:G181R, S:R346T, S:F45...

pango designation v1.27

Release notes

3475c5b - Cornelius Roemer, 2024-03-09 17:19:03 +0100 : Designate JN.1.1.6 (S:F456L on JN.1.1 polytomy)
2fba814 - Cornelius Roemer, 2024-03-09 18:37:08 +0100 : Designate JN.1.26 (S:R346T, after C26894T, USA)
4d2ed46 - Cornelius Roemer, 2024-03-09 18:38:47 +0100 : Designate JN.1.27 (S:M153I, after C26894T, C25680T, USA)
46718c5 - Cornelius Roemer, 2024-03-09 18:47:19 +0100 : Designate JN.1.4.4 (S:R346T)
ce0782a - Cornelius Roemer, 2024-03-09 18:50:06 +0100 : Designate JN.1.8.2 (S:R346T)
fd116e9 - Cornelius Roemer, 2024-03-09 18:54:47 +0100 : Designate JN.1.28 (C24034T, A29700G, East Asia/Oceania)
e312db5 - Cornelius Roemer, 2024-03-09 18:57:07 +0100 : Designate JN.1.1.7 (S:S31F)
b586709 - Cornelius Roemer, 2024-03-09 19:03:22 +0100 : Remove non-1243F seqs from JN.1.24
82aa62d - Cornelius Roemer, 2024-03-09 19:08:56 +0100 : Designate JN.1.29 (ORF1a:T3224A, after C2644T, Brazil)
72ac258 - Cornelius Roemer, 2024-03-14 09:03:50 +0100 : Designate JN.1.4.5 (ORF8:S103L)
f144a9b - Cornelius Roemer, 2024-03-14 10:15:40 +0100 : Designate JN.1.18.1 (S:T250N)
e0fc8aa - Cornelius Roemer, 2024-03-14 10:20:23 +0100 : Designate JN.1.30 (G21255T)
0092a7f - Cornelius Roemer, 2024-03-14 10:34:40 +0100 : Fix JN.1.4 designations
c83781e - Cornelius Roemer, 2024-03-14 10:40:34 +0100 : Designate JN.1.31 (ORF3a:V13L, C19186T)
b316ca1 - Cornelius Roemer, 2024-03-14 10:56:06 +0100 : Designate JN.1.16.1 (S:R346T)
f7585ae - Cornelius Roemer, 2024-03-14 11:00:32 +0100 : Designate KS.1 (JN.1.13.1.1, S:F456L)
58f350c - Cornelius Roemer, 2024-03-14 11:06:39 +0100 : Designate JN.1.4.6 (S:T572I, after T18453C)
ecf36b9 - Cornelius Roemer, 2024-03-14 11:25:42 +0100 : Designate JN.1.32 (S:T572I, directly on JN.1 polytomy)
1bf723e - Memorable, 2024-03-14 21:40:11 +0800 : Update lineage_notes.txt
e554b7f - Angie Hinrichs, 2024-03-14 15:52:00 -0700 : Merge pull request #2519 from Memorablea/patch-2
fa7c71d - Angie Hinrichs, 2024-03-15 10:21:39 -0700 : Removing name that matches many different sequences.
8efd327 - Memorable, 2024-03-17 13:19:51 +0800 : Update lineage_notes.txt
cb172ab - Cornelius Roemer, 2024-03-17 15:22:03 +0100 : Designate GE.1.2.2 (S:S408N, ORF1b:A517V, ORF1b:D1899E, ORF7a-ORF8 possibly completed deleted, Kenya)
01f1978 - Cornelius Roemer, 2024-03-17 15:31:14 +0100 : Designate KT.1 (GE.1.2.1.1, S:K77R, US/UK)
7b3ad94 - Cornelius Roemer, 2024-03-17 15:32:17 +0100 : Designate KT.1.1 (C683T, G15957A, USA)
4cdf840 - Cornelius Roemer, 2024-03-17 15:36:09 +0100 : Designate KT.1.2 (ORF1b:N2328S, C583T)
47c066b - Cornelius Roemer, 2024-03-17 16:08:05 +0100 : Designate KP.3 (S:Q493E)
98da9b2 - Cornelius Roemer, 2024-03-17 16:16:27 +0100 : Desigante JN.1.33 (S:A67V, G2782T, C5512T, China)
947fc66 - Cornelius Roemer, 2024-03-17 16:17:50 +0100 : Designate JN.1.34 (S:S704L)
efb6b9f - Cornelius Roemer, 2024-03-17 16:19:42 +0100 : Designate JN.1.35 (S:S680Y, after T18471C, Australia/New Zealand)
99bec76 - Cornelius Roemer, 2024-03-17 16:24:07 +0100 : Designate JN.1.36 (S:Q677H, after A29086T)
76391fc - Federico Gueli, 2024-03-17 17:50:32 +0100 : Update lineage_notes.txt
be72bd5 - Memorable, 2024-03-19 13:26:55 +0800 : Update lineage_notes.txt
1da2694 - Cornelius Roemer, 2024-03-19 14:01:53 +0100 : Designate KP.2.1 (S:Q1201K)
92ae63a - Cornelius Roemer, 2024-03-19 14:03:44 +0100 : Designate KP.2.2 (S:F59L, S:K1266R)
e03042f - Cornelius Roemer, 2024-03-19 15:47:09 +0100 : Designate JN.1.30.1 (S:R346T, after T7789C, India)
f0368ef - Angie Hinrichs, 2024-03-19 15:58:20 -0700 : Merge pull request #2524 from Memorablea/patch-2
48ed0b8 - Angie Hinrichs, 2024-03-19 15:59:47 -0700 : Merge pull request #2526 from FedeGueli/patch-30
429fbed - Angie Hinrichs, 2024-03-19 16:16:57 -0700 : Merge pull request #2527 from Memorablea/patch-3
617afbf - Cornelius Roemer, 2024-03-20 17:00:32 +0100 : Designate JQ.2.1 (S:L455S, South Africa)
b450700 - Cornelius Roemer, 2024-03-25 07:32:02 +0100 : Designate XDD.1.1.1 (S:R346T)
1cda06a - Cornelius Roemer, 2024-03-25 07:51:38 +0100 : Designate KU.1 (JN.1.30.1.1, S:K182Q) and KU.2 (S:F456L)
388d260 - Cornelius Roemer, 2024-03-25 07:55:12 +0100 : Designate JN.1.18.2 (S:F59S)
dc9f270 - Cornelius Roemer, 2024-03-25 08:11:17 +0100 : Designate JN.1.36.1 (S:S680F, South Korea)
b62fdd6 - Cornelius Roemer, 2024-03-25 08:13:13 +0100 : Designate KV.1 (S:S680F)
febf823 - Cornelius Roemer, 2024-03-25 08:15:01 +0100 : Designate JN.1.37 (S:S680F, on polytomy)
d2c609b - Cornelius Roemer, 2024-03-25 08:20:23 +0100 : Designate JN.1.28.1 (ORF1a:P1640L, C19545T, C24370T) and KW.1 (JN.1.28.1.1, S:T572I, Australia)
4c84077 - Cornelius Roemer, 2024-03-25 08:25:21 +0100 : Desigante JN.1.38 (ORF1b:R1736K, USA)
c193ce6 - Cornelius Roemer, 2024-03-25 08:27:30 +0100 : Desigante JN.1.39 (G2782T)
b515b3a - Cornelius Roemer, 2024-03-25 08:33:16 +0100 : Designate JN.1.40 (S:S31P, Mexico)
36cdaa3 - Cornelius Roemer, 2024-03-25 08:37:35 +0100 : Designate JN.1.41 (S:S1252F, on A29086T, USA)
bf6fa8b - Cornelius Roemer, 2024-03-25 08:39:31 +0100 : Designate JN.1.42 (C5581A, South America)
06e2b57 - Cornelius Roemer, 2024-03-25 08:43:34 +0100 : Designate JN.1.43 (A25237G), JN.1.43.1 (C19488T, C29218T, Brazil)
72653ed - Cornelius Roemer, 2024-03-25 08:50:27 +0100 : Designate KP.1.1.1 (S:K182N)
8aa6137 - Cornelius Roemer, 2024-03-25 09:00:54 +0100 : Designate JN.1.44 (ORF6:P57L)
2f4b63c - Federico Gueli, 2024-03-25 13:17:21 +0100 : Update lineage_notes.txt
0c04882 - Cornelius Roemer, 2024-03-26 17:39:36 +0100 : Designate 30 extra JN.1.23
b521ee2 - Cornelius Roemer, 2024-03-26 17:45:04 +0100 : Designate XDU (Recombinant lineage of BA.2.86.1, BA.2.86.1 (breakpoint between 11957-12729), Japan,)
2290342 - Cornelius Roemer, 2024-03-26 17:55:33 +0100 : Designate XDP.1 (S:E1092D, after ORF1a:L397P, ORF1a:H388Y)
0f6d6e1 - Cornelius Roemer, 2024-03-26 18:39:58 +0100 : Designate JN.2.2.1 (S:N487D, Netherlands)
bbeaa01 - Federico Gueli, 2024-03-27 07:34:53 +0100 : Update lineage_notes.txt
c542214 - Federico Gueli, 2024-03-27 10:04:35 +0100 : Update lineage_notes.txt
9e97eb9 - Cornelius Roemer, 2024-03-29 11:22:55 +0100 : Designate JN.1.8.3 (C13821T, C14925T)
5bddf8f - Cornelius Roemer, 2024-03-29 11:26:09 +0100 : Designate KY.1 (JN.1.8.2.1, ORF1a:N3774D, Nigeria)
1cb2994 - Cornelius Roemer, 2024-03-29 11:32:53 +0100 : Designate JN.14 (C29614T, S:S680F, Thailand/Japan)
f68f404 - Cornelius Roemer, 2024-03-29 11:35:59 +0100 : Designate JN.1.45 (G18756T)
0fb7bc5 - Memorable, 2024-03-30 13:44:57 +0800 : Update lineage_notes.txt
b9b6ec7 - Cornelius Roemer, 2024-04-02 14:05:49 +0200 : Designate XDV (XDE, JN.1, XDE, JN.1 (breakpoints between 19326-21608, 27915-28297, 28958-29535), from #2402) with 13 seqs)
30cec9b - Cornelius Roemer, 2024-04-02 14:07:37 +0200 : Designate XDV.1 (S:F456L (T22930A), on C11572T branch)
7d580c8 - Cornelius Roemer, 2024-04-02 14:34:17 +0200 : Designate JN.1.42.1 ( S:F59S)
d96b1ea - Cornelius Roemer, 2024-04-02 14:37:42 +0200 : Designate JN.1.46 (ORF1a:L3116F, T4885C)
82d8358 - Cornelius Roemer, 2024-04-02 14:41:29 +0200 : Designate JN.1.4.7 (ORF3a:G18D)
4a1ca73 - Cornelius Roemer, 2024-04-02 17:12:56 +0200 : Designate KV.2 (JN.1.4.5.2, S:T572I, ORF1a:P971L, C11956T, USA)
71451fa - Angie Hinrichs, 2024-04-02 18:46:44 -0700 : Merge pull request #2533 from FedeGueli/patch-32
07df22c - Angie Hinrichs, 2024-04-02 18:51:32 -0700 : Merge pull request #2535 from FedeGueli/patch-33
81da870 - Cornelius Roemer, 2024-04-03 17:49:04 +0200 : Designate KW.1.1 (S:F456L, ORF1b:R2009K, Australia/Japan)
1343104 - Cornelius Roemer, 2024-04-04 08:50:33 +0200 : Designate KZ.1 (JN.1.1.6 with ORF1b:V1092F), KZ.1.1 (S:R346T), KZ.1.1.1 (S:T572I)
c0fd244 - Cornelius Roemer, 2024-04-04 09:23:31 +0200 : Designate JN.1.7.3 (S:R346T)
1b26492 - Federico Gueli, 2024-04-04 16:05:52 +0200 : Update lineage_notes.txt
cd77b44 - Yat-sing Ng, 2024-04-05 21:40:51 +0800 : Update lineage_notes.txt
0ba3daf - Yat-sing Ng, 2024-04-05 21:43:08 +0800 : Update alias_key.json
e25cc5d - Yat-sing Ng, 2024-04-05 22:07:14 +0800 : Update lineage_notes.txt
d6b3019 - Angie Hinrichs, 2024-04-05 09:00:45 -0700 : Merge pull request #2537 from FedeGueli/patch-31
053a58c - Angie Hinrichs, 2024-04-05 09:01:36 -0700 : Merge pull request #2541 from Memorablea/patch-2
6246629 - Angie Hinrichs, 2024-04-05 09:02:00 -0700 : Merge pull request #2550 from FedeGueli/patch-34
859d2e1 - Angie Hinrichs, 2024-04-05 09:08:04 -0700 : Merge pull request #2551 from Over-There-Is/patch-7
fe1b485 - Yat-sing Ng, 2024-04-06 00:10:55 +0800 : Update lineage_notes.txt
771f02c - Angie Hinrichs, 2024-04-05 09:24:03 -0700 : Merge pull request #2552 from Over-There-Is/patch-8
452cb0a - aviczhl2, 2024-04-06 21:10:59 +0800 : add_1_from_main_31_from_lineage_proposal
158973c - Angie Hinrichs, 2024-04-12 16:09:06 -0700 : Merge pull request #2553 from aviczhl2/master
8fbd0bc - Cornelius Roemer, 2024-04-15 17:31:11 +0200 : Designate KP.4 (JN.1.11.1.4, C6070T, India), KP.4.1 (S:R346T, C19884T), KP.4.2 (S:R346T, S:K187R)
0f3e1f8 - Cornelius Roemer, 2024-04-15 17:35:53 +0200 : Designate KP.1.2 (S:T572I)
b0a0b07 - Cornelius Roemer, 2024-04-15 17:38:25 +0200 : Designate KP.2.3 (S:H146Q, ORF3a:K67N)
9fcb3e6 - Cornelius Roemer, 2024-04-15 18:00:18 +0200 : Designate JN.1.47 (C8074T, C7594T), JN.1.47.1 (S:S221L, USA/Mexico), JN.1.47.2 ( S:T572I, S:R683Q, USA)
52f3337 - Cornelius Roemer, 2024-04-15 18:04:28 +0200 : Designate JN.1.16.2 (C4777T), LA.1 (JN.1.16.2.1, S:R346T), LA.2 (S:R346I)
0c19ec3 - Cornelius Roemer, 2024-04-15 18:09:10 +0200 : Broaden JN.1.1.3 to not require ORF1b:H2388Y
b51c68c - Cornelius Roemer, 2024-04-15 18:12:35 +0200 : Designate JN.1.9.2 (S:R346T), LB.1 (JN.1.9.2.1, S:F456L)
be7e605 - Cornelius Roemer, 2024-04-15 18:15:49 +0200 : Designate JN.1.7.4 ( S:F456L (T22928C))
2a82248 - Cornelius Roemer, 2024-04-15 18:17:37 +0200 : Designate JN.1.24 (S:R346T)
dffbf6a - Cornelius Roemer, 2024-04-15 18:20:07 +0200 : Designat...

pango designation v1.26

Release notes

a4a5ba0 - Federico Gueli, 2024-02-04 19:28:32 +0100 : Update lineage_notes.txt
a2c9a60 - Cornelius Roemer, 2024-02-12 13:37:09 +0100 : Designate JN.1.4.3 (S:T572I) from #2487
48ee76d - Cornelius Roemer, 2024-02-12 13:41:40 +0100 : Designate XDT (recombinant of BA.2.86.4, GK.1 (breakpoint between 23673-24378), Ireland/UK, from #2485)
dc148ec - Cornelius Roemer, 2024-02-12 13:51:58 +0100 : Designate HK.13.2.1 (S:T250I, N:T379I, Greece, from #2480)
2fcf851 - Cornelius Roemer, 2024-02-12 13:56:32 +0100 : Designate KN.1 (GK.1.10.1.1, S:Y200C, Brazil) and KN.1.1 (S:N450D)
7651872 - Cornelius Roemer, 2024-02-12 13:59:11 +0100 : Designate JN.1.1.4 (S:V1264L, from #2476)
0bbbe00 - Cornelius Roemer, 2024-02-20 16:54:27 +0100 : Designate JN.1.23 (S:K444R, S:Y453F, ORF1a:A307V, ORF1a:P2144L, Brazil, from #2488)
4241e54 - Cornelius Roemer, 2024-02-22 19:30:19 +0100 : Designate KP.1 (JN.1.11.1.1, S:K1086R)
46a79f3 - aviczhl2, 2024-02-25 12:21:38 +0800 : add_3_autoref_from_main_and_10_from_lineage_proposals
569c1af - Cornelius Roemer, 2024-03-01 09:25:58 +0100 : Designate JN.1.7.1 (B.1.1.529.2.86.1.1.7.1, S:R346K, England)
7125b18 - Cornelius Roemer, 2024-03-01 09:32:17 +0100 : Designate JN.1.7.2 (ORF1b:C1563F, Americas)
a528c79 - Cornelius Roemer, 2024-03-01 16:22:25 +0100 : Designate KQ.1 (JN.1.4.3.1, S:R346T, USA)
1845c66 - Federico Gueli, 2024-03-01 17:01:12 +0100 : Update lineage_notes.txt
19cf1e5 - Cornelius Roemer, 2024-03-01 17:11:29 +0100 : Designate JN.1.13.1 (S:R346T, S:F59S, USA)
d262c30 - Cornelius Roemer, 2024-03-01 17:14:37 +0100 : Designate JN.1.1.5 (S:R346T)
77ac735 - Yat-sing Ng, 2024-03-03 15:09:04 +0800 : Update lineage_notes.txt
1cce500 - Cornelius Roemer, 2024-03-04 15:14:20 +0100 : Designate KR.1 (JN.1.1.5.1, S:F456L, after C28498T)
a29effe - Cornelius Roemer, 2024-03-04 15:24:40 +0100 : Designate KP.1.1 (JN.1.11.1.1.1, S:R346T)
5e932aa - Cornelius Roemer, 2024-03-04 15:51:54 +0100 : Designate KP.2 (JN.1.1.11.1.2, S:R346T on JN.1.11.1 polytomy)
92b5fbd - Cornelius Roemer, 2024-03-04 15:56:33 +0100 : Designate JN.1.24 (S:C1243F, USA)
3f22231 - Cornelius Roemer, 2024-03-04 16:01:11 +0100 : Designate XDK.1 (S:R346T, G11596A)
2817bce - Cornelius Roemer, 2024-03-04 16:08:16 +0100 : Designate JN.1.25 (C706T, A7708T, India) and JN.1.25.1 (S:R346T, India)
62759f0 - Cornelius Roemer, 2024-03-04 19:49:57 +0100 : Remove mistakenly committed .swp
788e5fe - Cornelius Roemer, 2024-03-04 19:50:38 +0100 : Remove mistakenly committed .command_log
ab76d4a - Cornelius Roemer, 2024-03-04 19:51:44 +0100 : Designate XDQ.1 (S:A475V, Japan)
c93fc79 - Cornelius Roemer, 2024-03-05 13:18:09 +0100 : Designate JQ.2 (S:R346T, G2944A, South Africa, from #2505)
a40d20b - Angie Hinrichs, 2024-03-05 10:10:47 -0800 : Merge pull request #2486 from FedeGueli/patch-28
aa82251 - Angie Hinrichs, 2024-03-05 10:18:22 -0800 : Merge pull request #2499 from aviczhl2/master
eb3d385 - Angie Hinrichs, 2024-03-05 10:19:13 -0800 : Merge pull request #2507 from FedeGueli/patch-29
fae598a - Angie Hinrichs, 2024-03-05 10:21:49 -0800 : Merge pull request #2509 from Over-There-Is/patch-6
1f458d4 - Cornelius Roemer, 2024-03-06 15:25:55 +0100 : Designate JN.13 (A14397G) and JN.13.1 (S:A475V) [Editor's note: lineage_notes.txt says JN.1.13 is "S:A1087S, after C26894T,C25680T, USA, from #2464" and JN.13.1 adds "S:R346T, S:F59S" and that is consistent with seqs in lineages.csv]

pango designation v1.25

Release notes

5b7b299 - Angie Hinrichs, 2024-01-18 11:04:12 -0800 : Remove 2339 names that map to multiple sequences in the UCSC UShER tree that are on different lineage branches.
f743d97 - Cornelius Roemer, 2024-01-21 22:18:51 +0100 : Designate JN.11 (S:V1104L, Asia, from sars-cov-2-variants/lineage-proposals#1303)
54f733f - Cornelius Roemer, 2024-01-21 23:58:44 +0100 : Designate JN.1.12 (S:F456V, ORF7a:A8T)
80a788e - Cornelius Roemer, 2024-01-22 00:04:13 +0100 : Designate JN.12 (S:F456V, ORF1a:A498G)
a6e6ad3 - Cornelius Roemer, 2024-01-22 00:42:37 +0100 : Designate JN.1.11.1 (S:F456L, India)
acc65d1 - Angie Hinrichs, 2024-01-22 17:22:03 -0800 : Merge pull request #2466 from AngieHinrichs/removeDupNames
cb7e158 - Cornelius Roemer, 2024-01-31 16:43:00 +0100 : Designate KM.1 (XBB.1.5.4.1, S:K478R, S:M177I, S:N185D, N:A155V, ORF1a:T3696A, Guinea/Senegal)
68ca039 - Cornelius Roemer, 2024-02-01 16:21:06 +0100 : Designate BA.2.87 (C18744T, no C9866T) and BA.2.87.1 (saltation with 15+ spike AA mutations, South Africa, from #2484)
ce9f9d0 - Cornelius Roemer, 2024-02-01 23:17:49 +0100 : Designate XDQ (ecombinant lineage of BA.2.86.1 and FL.15.1.1 (breakpoint between 223605 and 24377), from #2481
f39ed9e - Cornelius Roemer, 2024-02-01 23:23:34 +0100 : Designate GK.1.10.1 (S:A475V, C29668T, Brazil, from #2479)
3292a20 - Cornelius Roemer, 2024-02-01 23:30:25 +0100 : Designate XDR (Recombinant lineage of JD.1.1.1 and JN.1.1 (breakpoint between 11043 and 11726), Brazil, from #2477)
d68c064 - Cornelius Roemer, 2024-02-01 23:47:03 +0100 : Designate JN.1.13 (S:A1087S, USA) and JN.1.14 (S:R346S, USA)
1406788 - Cornelius Roemer, 2024-02-01 23:49:29 +0100 : Designate JN.1.15 (S:A688V)
c843c38 - Cornelius Roemer, 2024-02-01 23:51:10 +0100 : Designate JN.1.4.1 (S:E654V, Ireland)
7058743 - Cornelius Roemer, 2024-02-01 23:53:03 +0100 : Designate JN.1.2.1 (S:H1101Y, Ireland)
d2eec4d - Cornelius Roemer, 2024-02-01 23:55:25 +0100 : Designate JN.1.16 (S:F456L)
5438c32 - Cornelius Roemer, 2024-02-01 23:58:09 +0100 : Designate JN.1.17 (S:A222V, USA)
271f9e0 - Cornelius Roemer, 2024-02-02 16:35:10 +0100 : Designate JN.1.4.2 (S:N185D, USA, from #2462)
253610a - Cornelius Roemer, 2024-02-02 18:47:23 +0100 : Correct designations for BA.2.87 after discussion with @AngieHinrichs
425fe95 - Cornelius Roemer, 2024-02-04 14:55:23 +0100 : Designate JN.1.18 (S:R346T, directly on JN.1 polytomy)
0b504b4 - Cornelius Roemer, 2024-02-04 15:07:19 +0100 : Designate JN.1.19 (ORF8:I71V)
93188fd - Cornelius Roemer, 2024-02-04 15:14:41 +0100 : Designate JN.1.20 (S:S31F, directly on JN.1 polytomy)
ead98f6 - Cornelius Roemer, 2024-02-04 15:57:03 +0100 : Designate XDS (recombinant of EG.5.1.3, JN.3.2.1, EG.5.1.3 (breakpoints at 8294-8392 and 26834-27506)
cd1621e - Cornelius Roemer, 2024-02-04 16:04:11 +0100 : Designate JN.1.9.1 (S:T572I, ORF1a:A3143V)
761aec8 - Cornelius Roemer, 2024-02-04 16:06:16 +0100 : Designate JN.1.21 (S:H1058Y)
a90c8e3 - Cornelius Roemer, 2024-02-04 16:08:17 +0100 : Designate JN.1.22 (ORF1a:S505F, C13019T)
4a389ef - Angie Hinrichs, 2024-02-05 16:08:36 -0800 : Removing Slovakia/RNA/ names because they have many matches.

pango designation v1.24

Release notes

fb96d0a - Cornelius Roemer, 2023-10-12 23:14:36 +0200 : Designate BA.2.86.2 (ORF7a:E22D, South Africa/Botswana) with 25 seqs
bea249a - Cornelius Roemer, 2023-10-12 23:21:29 +0200 : Designate BA.2.86.3 (C222T, C1960T, T12775C, South Africa) with 25 seqs
6c3cbc3 - Cornelius Roemer, 2023-10-12 23:26:59 +0200 : Designate JQ.1 (BA.2.86.3.1, S:T95I, Denmark/France/South Africa) with 13 seqs
62ee71f - Cornelius Roemer, 2023-10-12 23:32:07 +0200 : Designate JN.2 (BA.2.86.1.2 with ORF1a:Y621C, Europe/North America) with 100 seqs
8424ad2 - Cornelius Roemer, 2023-10-12 23:34:17 +0200 : Designate JN.3 (BA.2.86.1.3, ORF1a:T2087I, Europe) with 60 seqs
b14b69a - Cornelius Roemer, 2023-10-12 23:50:19 +0200 : Designate GK.2.4 (S:K356T, USA-NY) with 15 seqs
f1b2dab - Cornelius Roemer, 2023-10-12 23:54:38 +0200 : Designate HK.12 (S:K356T, China/Singapore) with 12 seqs
4f9712c - Cornelius Roemer, 2023-10-12 23:58:51 +0200 : Designate EG.6.1.2 (S:V705I, Israel) with 80 seqs
c3904ca - Cornelius Roemer, 2023-10-13 00:09:30 +0200 : Designate HV.1.1 (S:K444T, on ORF1a:T4083M branch, USA) with 15 seqs
471889e - Cornelius Roemer, 2023-10-13 00:14:55 +0200 : Designate HV.1.2 (S:S514F, on ORF1a:T4083M branch, USA) and HV.1.3 (S:493L, USA)
ab3b625 - Cornelius Roemer, 2023-10-13 00:16:22 +0200 : Designate HV.1.4 (S:A1078S, USA) with 50 seqs
49cdcb4 - Cornelius Roemer, 2023-10-13 00:23:33 +0200 : Designate HK.13 (S:L455F (G22927C), China, 250 seqs) and HK.13.1 (C13378T, A24604G)
b123561 - Cornelius Roemer, 2023-10-13 00:25:33 +0200 : Designate HK.13.2 (S:F797L, S:D1153H) with 30 seqs
af79499 - Cornelius Roemer, 2023-10-13 00:29:02 +0200 : Designate HK.1.1 (S:456L (G22927T), China) with 40 seqs
2ee937c - Cornelius Roemer, 2023-10-13 00:31:29 +0200 : Designate HK.1.2 (S:455F (G22927C), S:T307I, China/New Zealand) with 50 seqs
c7550b1 - Cornelius Roemer, 2023-10-13 00:35:46 +0200 : Designate HK.14 (S:L455F (G22927C), on C11779T branch, China) with 80 seqs
04f540f - Cornelius Roemer, 2023-10-13 00:43:46 +0200 : Designate HK.15 (S:A262T, on C11779T branch) with 150 seqs
5283757 - Cornelius Roemer, 2023-10-13 00:47:41 +0200 : Designate EG.5.1.11 (S:K182Q, Indonesia) with 20 seqs
6ca5c26 - Cornelius Roemer, 2023-10-13 00:50:52 +0200 : JR.1 (EG.5.1.11.1, S:478R, ORF3a:Y91C, Indonesia) with 10 seqs
bd9a2f7 - Cornelius Roemer, 2023-10-13 00:52:38 +0200 : Designate JR.1.1 (S:L455F (G22927C)) with 10 seqs
dde47c8 - Cornelius Roemer, 2023-10-13 01:01:35 +0200 : Designate GA.2.1 (XBB.1.17.1.2.1, S:E554K) and GA.2.1.1 ( S:N450D, S:K478R)
561040b - Cornelius Roemer, 2023-10-13 01:05:11 +0200 : Designate GA.4.2 (S:K558N, S:G1124S, England/Italy) with 4 seqs
516ee4a - Cornelius Roemer, 2023-10-13 01:06:35 +0200 : Designate GA.4.3 (S:F186L, S:L585F, Greece/Romania) with 10 seqs
6106107 - Cornelius Roemer, 2023-10-13 01:08:51 +0200 : Designate GA.4.1.2 (S:T572I, England) with 10 seqs
521220b - Cornelius Roemer, 2023-10-13 01:12:33 +0200 : Designat HK.16 (N:P67S, S:A684V, S:V1264L) with 50 seqs
7362fc8 - Cornelius Roemer, 2023-10-13 01:15:01 +0200 : Designate HK.17 (S:S494P, China) with 50 seqs
1bf9c67 - Cornelius Roemer, 2023-10-13 01:18:07 +0200 : Designate HK.18 (S:L452R) with 30 seqs
d077888 - Cornelius Roemer, 2023-10-13 01:21:02 +0200 : Designate HK.19 (S:F157L) with 70 seqs
2fe3c52 - Cornelius Roemer, 2023-10-13 01:30:46 +0200 : Designate XBB.2.3.15 (ORF1a:I4308V)
8d36dfd - Cornelius Roemer, 2023-10-13 01:33:22 +0200 : Designate JS.1 (XBB.2.3.15.1, S:S256T) with 150 seqs
e5fbf04 - Cornelius Roemer, 2023-10-13 01:34:16 +0200 : Desingate JS.2 (S:T323I) with 100 seqs
7614167 - Cornelius Roemer, 2023-10-13 01:44:07 +0200 : Designate XCQ (Recombinant lineage of XBB.2.3 and XBB.1.5 (breakpoint between 23123-27431), Guatemala, from #2289) with 80 seqs
3acc442 - Cornelius Roemer, 2023-10-13 01:49:47 +0200 : Desingate XBB.2.3.16 (S:K478N, USA) with 15 seqs
45e216e - Cornelius Roemer, 2023-10-13 01:50:39 +0200 : Designate XBB.2.3.17 (S:N450D, USA) with 15 seqs
a4d823d - Cornelius Roemer, 2023-10-13 02:04:55 +0200 : Designate JD.2.1 (S:E554K, Brazil) with 20 seqs
a5fbef6 - Cornelius Roemer, 2023-10-13 02:24:49 +0200 : Designate GW.5.2 (N:T379I) and GW.5.3 (T20310C, C28519T)
7dcb5ae - Cornelius Roemer, 2023-10-13 02:28:03 +0200 : Designate GW.5.3.1 (S:A475V, S:G184A) with 10 seqs
2626654 - Cornelius Roemer, 2023-10-13 15:05:57 +0200 : Designate HW.1.2 (G15957A, Australia) and HW.1.3 (N:T391I, Australia)
0f50930 - Cornelius Roemer, 2023-10-13 15:32:39 +0200 : Designate XBC.1.6.5, XBC.1.6.6, JT.1 (XBC.1.6.6.1, S:V445A)
17d3581 - Cornelius Roemer, 2023-10-13 15:51:37 +0200 : Withdraw HK.1.1 as smaller than thought (only 6 sequences have 257V and G22927T)
cfe2ed8 - Cornelius Roemer, 2023-10-13 15:59:13 +0200 : Designate extra BA.2.86
032d300 - Memorable, 2023-10-13 22:23:41 +0800 : Update lineage_notes.txt forBA.86.2 and JN.2
bf14f63 - Cornelius Roemer, 2023-10-13 22:12:26 +0200 : Designate GL.2 (XAY.1.1.1.2, ORF1a:S723P, South Korea/Japan/HongKong) with 10 seqs
9088232 - Cornelius Roemer, 2023-10-13 22:15:47 +0200 : Designate GL.3 (XAY.1.1.1.3, ORF1a:P1640S, Germany) with 300 seqs
ba10206 - Cornelius Roemer, 2023-10-13 22:17:17 +0200 : Add extra XAY.1.1.1 designations
550f9b2 - Angie Hinrichs, 2023-10-13 13:34:39 -0700 : Merge pull request #2306 from ciscorucinski/fix/workflow/issue-milestone-collector
b06d726 - Angie Hinrichs, 2023-10-13 13:41:56 -0700 : Merge pull request #2324 from Memorablea/patch-1
1a5955d - Cornelius Roemer, 2023-10-13 23:05:28 +0200 : Designate XCR (recombinant lineage of GK.1.1 and FU.1 (breakpoint between 23674-24372), USA, from #2323)
3223321 - Cornelius Roemer, 2023-10-15 11:43:54 +0200 : Designate GK.5 (S:G181V, Brazil) and GK.5.1 (S:E180K)
6fe25ac - Cornelius Roemer, 2023-10-15 11:45:31 +0200 : Designate GK.6 (XBB.1.5.70.6, S:N556K, S:E583A) with 50 seqs
61604b2 - Cornelius Roemer, 2023-10-15 11:46:52 +0200 : Designate GK.7 (XBB.1.5.70.7, N:D3G) with 70 seqs
af7f5c4 - Cornelius Roemer, 2023-10-15 11:48:51 +0200 : Designate GK.8 (XBB.1.5.70.8, ORF:E55Q, Brazil) with 50 seqs
1c2b15f - Cornelius Roemer, 2023-10-15 11:50:52 +0200 : Designate GK.8.1 (XBB.1.5.70.8.1, S:N185I, S:A475V) with 15 seqs
d6326f6 - Cornelius Roemer, 2023-10-15 11:54:08 +0200 : Designate GK.9 (XBB.1.5.70.9, S:T307S, Brazil) with 10 seqs
51bb3dd - Cornelius Roemer, 2023-10-15 12:01:03 +0200 : Designate GK.10 (XBB.1.5.70.10, S:E554G, Brazil) with 15 seqs
92bde5e - Cornelius Roemer, 2023-10-15 12:02:13 +0200 : Designate GK.11 (XBB.1.5.70.11, S:T883I, Brazil) with 8 seqs
71796df - Cornelius Roemer, 2023-10-15 12:09:03 +0200 : Designate GK.1.5 (XBB.1.5.70.1.5, S:F186L, ORF1a:T1597I, Brazil) with 15 seqs
ab068f9 - Cornelius Roemer, 2023-10-15 12:11:07 +0200 : Designate GK.1.6 (XBB.1.5.70.1.6, ORF3a:V50I, Colombia) with 150 seqs
8e45078 - Cornelius Roemer, 2023-10-15 12:12:27 +0200 : Designate GK.1.6.1 (XBB.1.5.70.1.6.1, S:A475V, ORF1a:I114V, Colombia) with 15 seqs
ceff314 - Cornelius Roemer, 2023-10-15 12:23:42 +0200 : Add extra GK.1.2 designations (especially some without T16974C) and remove erroneously added #2093 from notes
2e02c0f - Cornelius Roemer, 2023-10-15 12:26:58 +0200 : Designate GK.1.2.1 (XBB.1.5.70.1.2.1, S:A475V, ORF1a:D147G, ORF1a:D2592Y, ORF1a:T4175I, ORF1b:N1426K, Brazil/Colombia) with 12 seqs
441b454 - Cornelius Roemer, 2023-10-15 12:29:11 +0200 : Designate GK.1.7 (S:F186L, T11695C, Europe)
fa557e4 - Cornelius Roemer, 2023-10-15 12:35:50 +0200 : Designate GK.1.8 (S:E554K, S:A475V, Brazil) with 20 seqs
22a348a - Cornelius Roemer, 2023-10-15 12:45:18 +0200 : Designate GK.12 (XBB.1.5.70.12, S:T76I, S:N450D, Brazil) with 5 seqs
686748e - Cornelius Roemer, 2023-10-15 12:52:19 +0200 : Designate GK.1.9 (C17010T, USA)
26ababf - Cornelius Roemer, 2023-10-15 13:02:12 +0200 : Designate XBB.1.16.25 (ORF1a:K510E, C16611T, A29221G) with 300 seqs
cc16c73 - Cornelius Roemer, 2023-10-15 13:04:07 +0200 : Designate XCS (Recombinant lineage of GK.1.9 and XBB.1.16.25 (breakpoint between 223674-25044), USA, from #2311) with 30 seqs
c58b4a4 - Cornelius Roemer, 2023-10-15 13:15:00 +0200 : Designate GK.1.1.1 (C28432T, donor of XCR) with 190 seqs
bd0e486 - Cornelius Roemer, 2023-10-15 13:22:27 +0200 : Designate FU.1.1 (XBB.1.16.1.1.1, S:K1266R) with 160 seqs
24d57cc - Cornelius Roemer, 2023-10-15 13:25:09 +0200 : Designate FU.1.1.1 (XBB.1.16.1.1.1.1, S:N74S, USA) with 70 seqs
b4e8ab1 - Cornelius Roemer, 2023-10-15 14:33:52 +0200 : Designate HG.3 (XBB.2.3.8.3, S:S255F, South Korea) with 35 seqs
fc51cdc - Cornelius Roemer, 2023-10-15 14:35:55 +0200 : Designate HG.1.1 (S:A1190S, South Korea) with 40 seqs
987a9be - Cornelius Roemer, 2023-10-15 14:40:24 +0200 : Designate XBB.2.3.18 (S:F456L (T22930A), S:N450D, S:1231A, India) with 8 seqs
70e727f - Cornelius Roemer, 2023-10-15 14:44:02 +0200 : Designate GS.6 (XBB.2.3.11.6, S:A845S, Wales) with 70 seqs
1293572 - Cornelius Roemer, 2023-10-15 14:46:23 +0200 : Designate GS.4.1.1 (XBB.2.3.11.4.1.1, S:P561S, France) with 50 seqs
4a0edbe - Cornelius Roemer, 2023-10-15 14:51:19 +0200 : Designate GS.7 (XBB.2.3.11.7, ORF1a:L204I, C14925T) with 150 seqs
0470496 - Cornelius Roemer, 2023-10-15 14:52:14 +0200 : Designate GS.7.1 (XBB.2.3.11.7.1, S:E180Q, Tunisia) with 18 seqs
32ea609 - Cornelius Roemer, 2023-10-15 14:56:04 +0200 : Designate GS.8 (XBB.2.3.11.8, ORF3a:I179V, Vietnam) with 150 seqs
7804cb5 - Cornelius Roemer, 2023-10-15 15:01:05 +0200 : Designate GJ.6 (XBB.2.3.3.6, S:F456L (T22930A), M:G6S, India) with 15 seqs
d6cfeab - Cornelius Roemer, 2023-10-15 15:02:43 +0200 : Designate GJ.7 (XBB.2.3.3.7, S:E183K, Australia/NewZealand) with 37 seqs
604740d - Cornelius Roemer, 2023-10-15 15:12:18 +0200 : Designate JU.1 (XBB.2.3.12.1, S:N148T, S:Q218R, S:N450D, Georgia/Russia) with 12 seqs
3ab2f9c - Cornelius Roemer, 2023-10-15 15:16:11 +0200 : Designate JV.1 (DV.7.1.2.1, S:G485R, France) with 50 seqs
777ef39 - Cornelius Roemer, 2023-10-15 15:17:13 +0...

pango designation v1.23

Release notes

52c2083 - aviczhl2, 2023-08-19 01:21:00 +0800 : add 1 ref from main page and 3 refs from sars-cov-2-variants/lineage-proposals
31def30 - Angie Hinrichs, 2023-08-21 10:40:50 -0700 : Merge pull request #2199 from aviczhl2/master
1c8d6e4 - Cornelius Roemer, 2023-08-22 01:37:08 +0200 : Designate FW.1.1 (XBB.1.28.1.1.1, S:N148T, UK) with 50 seqs
5c181b8 - Cornelius Roemer, 2023-08-22 01:45:19 +0200 : Designate JC.1 (XBB.1.41.1.1, S:K77R, Japan/Hawaii) and XBB.1.41.2 (S:S494P)
7b6a943 - Cornelius Roemer, 2023-08-22 01:57:26 +0200 : Designate GA.4.1 (XBB.1.17.1.4.1, S:K478R, S:S704L, S:E554K, USA/Qatar) with 5 seqs
1b2a93d - Cornelius Roemer, 2023-08-22 02:02:06 +0200 : Designate GE.1.1 (XBB.2.3.10.1.1, S:E554K, Bangladesh/Singapore) with 30 seqs
6e850c3 - Cornelius Roemer, 2023-08-22 02:03:44 +0200 : Designate GE.1.2 (XBB.2.3.10.1.2, S:N148T, Kenya) with 40 seqs
688cb33 - Cornelius Roemer, 2023-08-22 02:23:06 +0200 : Designate XBB.1.5.102 (C6896T, C14085T, C19488T, Brazil-Amazonas) with 1300 seqs
9953957 - Cornelius Roemer, 2023-08-22 02:25:53 +0200 : Designate JD.1 (XBB.1.5.102, S:L455F, S:F456L (T22928C), A14634G, T28282C, Brazil, from #2203) with 60 seqs
2d25a8d - Federico Gueli, 2023-08-22 09:51:54 +0200 : Update lineage_notes.txt
7b1683c - Angie Hinrichs, 2023-08-22 11:22:47 -0700 : Merge pull request #2204 from FedeGueli/master-2
328785b - Cornelius Roemer, 2023-08-23 23:55:56 +0200 : Designate FL.1.5.2 (S:N481K, S:H681R, England/France/Denmark/US) with 8 seqs
5140e40 - Cornelius Roemer, 2023-08-24 00:20:55 +0200 : Designate JB.2.1 (XBB.1.5.53.2.1, S:H245Y, S:E554D, South Africa) with 10 seqs
24b7e71 - Cornelius Roemer, 2023-08-24 00:28:47 +0200 : Designate HK.6 (EG.5.1.1.6, S:D253G, ORF1a:A1923T, UK/USA) with 100 seqs
b2febbe - Cornelius Roemer, 2023-08-24 00:41:57 +0200 : Designate GS.2 (XBB.2.3.11.2, S:T470N, Singapore/Brunei) with 20 seqs
63bc309 - Cornelius Roemer, 2023-08-24 00:45:49 +0200 : Designate GS.3 (XBB.2.3.11.3, S:R190S, USA/UK) with 20 seqs
3760d6c - Cornelius Roemer, 2023-08-24 00:49:55 +0200 : Designate GS.4 (XBB.2.3.11.4, M:A104V, ORF1a:A104V, France) with 100 seqs
5dde128 - Cornelius Roemer, 2023-08-24 00:51:12 +0200 : Designate GS.4.1 (XBB.2.3.11.4.1, S:N185D, ORF3a:G172C, France) with 35 seqs
cffd0e3 - Cornelius Roemer, 2023-08-24 00:56:17 +0200 : Designate GE.1.3 (XBB.2.3.10.1.3, S:T732I) with 100 seqs
b1d0adc - Federico Gueli, 2023-08-24 00:57:09 +0200 : Update lineage_notes.txt
e58c620 - Cornelius Roemer, 2023-08-24 01:03:11 +0200 : Designate JE.1 (GJ.1.2.1.1, S:478R, Singapore/SouthKorea/US) with 7 seqs
238f48b - Cornelius Roemer, 2023-08-24 01:06:46 +0200 : Designate HG.2 (XBB.2.3.8.2, S:T259I, South Korea/USA) with 60 seqs
7e6a661 - Cornelius Roemer, 2023-08-24 01:31:55 +0200 : Designate JF.1 (XBB.1.16.6.1, S:L455F, USA) with 15 seqs
609bb64 - Cornelius Roemer, 2023-08-24 01:35:34 +0200 : Designate JF.2 (XBB.1.16.6.2, S:Q675H, USA/Wales) with 40 seqs
56f6198 - Cornelius Roemer, 2023-08-24 01:40:52 +0200 : Designate GK.1.4 (S:478R, S:98F, Brazil) with 5 seqs
d3ec617 - Cornelius Roemer, 2023-08-24 01:56:34 +0200 : Designate XCH (Recombinant of GK.1.3 and XBB.1.9 (or XBB.1.16), GK.1.3 Spike with ORF9b:I5T from donor, from #2173)
0f61ca7 - Cornelius Roemer, 2023-08-24 02:04:16 +0200 : Designate GK.2.1 (ORF1a:L624I, ORF1a:L3641S, ORF1b:S763C) with 100 seqs
8c1a514 - Cornelius Roemer, 2023-08-24 02:06:25 +0200 : Designate extra HK.3
2d2cdd6 - Cornelius Roemer, 2023-08-24 02:07:13 +0200 : Designate HK.3.1 (EG.5.1.1.3 with S:F157L, China) with 25 seqs
5a316cf - Federico Gueli, 2023-08-24 15:10:20 +0200 : Update lineage_notes.txt
18567dd - Angie Hinrichs, 2023-08-24 08:46:44 -0700 : Merge pull request #2211 from FedeGueli/master-4
ab4243e - Angie Hinrichs, 2023-08-24 09:10:50 -0700 : Merge pull request #2209 from FedeGueli/master-3
e843dc7 - Angie Hinrichs, 2023-08-24 11:05:19 -0700 : Typo fix: new lineage XCH was misspelled XGH in lineages.csv.
60ff1a4 - Cornelius Roemer, 2023-08-24 22:28:26 +0200 : Designate XCJ (Recombinant lineage of GM.2 with a little FP.1 (XBB.1.11.1.1) sandwich inserted in ORF1ab, from lineage-proposals#609)
56e3ad0 - Cornelius Roemer, 2023-08-24 22:31:18 +0200 : Designate GM.3 (XBB.2.3.6.3, ORF1a:R4017K) and GM.3.1 (S:N388K, Japan) with 250/60 seqs
a86f9c6 - Cornelius Roemer, 2023-08-25 00:16:54 +0200 : Designate HC.2 (XBB.1.5.44.2, S:F157L, Canada) with 20 seqs
0b118f7 - Cornelius Roemer, 2023-08-25 00:19:46 +0200 : Designate EG.5.1.7 (XBB.1.9.2.5.1.7, S:K278N) with 19 seqs
0b4d963 - Cornelius Roemer, 2023-08-25 21:02:26 +0200 : Designate JD.1.1 (XBB.1.5.102.1.1, S:A475V, Brazil/USA/Spain) with 30 seqs
93d2313 - Cornelius Roemer, 2023-08-25 21:04:04 +0200 : Designate JD.1.2 (XBB.1.5.102.1.2, S:P1162S, Brazil) with 40 seqs
168e64b - Cornelius Roemer, 2023-08-30 19:30:33 +0200 : Designate XBB.1.5.103 (S:F456L (T22928C), S:180/184del, S:N185D, Argentina) with 50 seqs
1cc7ca9 - Cornelius Roemer, 2023-08-30 22:43:17 +0200 : Designate XCH.1 (S:T573I) with 30 seqs
98c5e92 - Cornelius Roemer, 2023-08-30 23:27:36 +0200 : Designate JG.1 (EG.5.1.3.1, S:T732I, France) with 40 seqs
e28cf09 - Cornelius Roemer, 2023-08-30 23:30:01 +0200 : Designate HK.7 (EG.5.1.1.7, S:N148T, China) 40 seqs
94fbed4 - Cornelius Roemer, 2023-08-30 23:33:03 +0200 : Designate EG.2 (S:K304N, Indonesia/Japan) with 40 seqs
ca37eb2 - Cornelius Roemer, 2023-08-30 23:34:16 +0200 : Designate EG.2.3 (S:I742V, Indonesia/Singapore) with 100 seqs
1d90913 - Cornelius Roemer, 2023-08-30 23:35:52 +0200 : Designate EG.2.4 (S:K356T, ORF1a:G2265D, Singapore) with 15 seqs
b375fca - Cornelius Roemer, 2023-08-30 23:38:03 +0200 : Designate EG.2.5 (S:Q675H, Indonesia) with 40 seqs
c7e7c28 - Cornelius Roemer, 2023-08-31 13:38:03 +0200 : Designate EG.13 (ORF1a:K789N) with 1000 seqs
1118b71 - Cornelius Roemer, 2023-08-31 13:41:33 +0200 : Designate FL.4.8 (S:478R, Indonesia) with 190 seqs
c2c2963 - Cornelius Roemer, 2023-08-31 14:06:02 +0200 : Designate FL.4.9 (S:S254P, ORF3a:D173G) with 200 seqs
1403582 - Cornelius Roemer, 2023-08-31 14:07:30 +0200 : Designate FL.4.10 (S:V1129I, China) with 150 seqs
713fcd7 - Cornelius Roemer, 2023-08-31 14:23:59 +0200 : Designate FY.3.2 (ORF1a:E3764G, China, from #2000) and FY.3.3 (ORF3a:V48F, China)
ebc32aa - Cornelius Roemer, 2023-08-31 14:39:52 +0200 : Designate JH.1 (BQ.1.2.2.1, West Africa, S:K182E, S:P251L, S:486A, S:S494P, S:E554K, from #2068) with 13 seqs
9043731 - Cornelius Roemer, 2023-08-31 14:43:24 +0200 : Designate JH.2 (BQ.1.2.2.2, S:A484T, S:V486A, USA/Canada/Finland, from #2068) with 4 seqs
1fbcb3b - Cornelius Roemer, 2023-08-31 14:58:44 +0200 : Designate FL.2.6 (S:N641K, from #2180) with 70 seqs
4749974 - Cornelius Roemer, 2023-08-31 15:09:15 +0200 : Designate XCK (FL.1.5.1 (5' up to and including S:701) and BQ.1.2.2, from #2215) with 9 seqs
e363047 - Federico Gueli, 2023-08-31 15:21:29 +0200 : Update lineage_notes.txt
a397154 - Cornelius Roemer, 2023-08-31 21:51:06 +0200 : Designate FL.10.2 (S:K356T, S:T523N, Canada/USA) with 30 seqs
2351b67 - Angie Hinrichs, 2023-08-31 16:44:27 -0700 : Merge pull request #2235 from FedeGueli/patch-15
40b2d67 - Cornelius Roemer, 2023-09-01 13:20:22 +0200 : Designate XCL (Recombinant lineage of XBB/GK.2.1, Europe, from #2227) with 40 seqs
8f78e43 - Cornelius Roemer, 2023-09-01 13:35:21 +0200 : Designate FL.30 (S:484K, Greece, from #2206) with 27 seqs
c520d0c - Cornelius Roemer, 2023-09-01 13:58:38 +0200 : Designate GW.1.1 (XBB.1.19.1.1.1, S:F456L, China/Japan/Singapore) with 13 seqs
f75470e - Cornelius Roemer, 2023-09-01 14:00:57 +0200 : Designate GK.2.2 (XBB.1.5.70.2.2, S:E554D) with 19 seqs
5e035b4 - Cornelius Roemer, 2023-09-01 14:06:09 +0200 : Designate HF.1.1 (S:H1101Y, on N:A35T branch, South Korea/USA/Canada) with 70 seqs
154fb44 - Cornelius Roemer, 2023-09-01 14:08:57 +0200 : Designate HF.1.2 (XBB.1.16.13.1.2, S:A688V, on ORF1a:P1158S branch, USA) with 30 seqs
9e08418 - Cornelius Roemer, 2023-09-01 14:10:45 +0200 : Designate XBB.1.5.104 (S:K304Q, USA) with 380 seqs
9f68787 - Cornelius Roemer, 2023-09-01 14:19:15 +0200 : Designate XBB.1.16.23 (S:K304Q, India/USA/Japan/Singapore) with 40 seqs
f9cd663 - Cornelius Roemer, 2023-09-01 14:23:10 +0200 : Designate JH.1 (XBB.1.5.3.1, S:K304Q, USA) with 200 seqs
49aae7b - Cornelius Roemer, 2023-09-01 14:26:33 +0200 : Designate XBB.1.5.105 (S:K304N, USA/Europe) with 70 seqs
9527e15 - Cornelius Roemer, 2023-09-01 14:35:50 +0200 : Designate HK.8 (EG.5.1.1.8, S:L455F, on C11779T branch) with 40 seqs
f271b57 - Cornelius Roemer, 2023-09-01 14:37:25 +0200 : Designate HK.9 (EG.5.1.1.9, S:R190K, on C11779T branch, England) with 60 seqs
36e3fb0 - Cornelius Roemer, 2023-09-01 14:41:13 +0200 : Designate JJ.1 (XBB.1.9.2.5.1.3.1, S:L455F, ORF3a:I47V, China/Japan) with 27 seqs
f655671 - Cornelius Roemer, 2023-09-01 14:44:46 +0200 : Designate HK.10 (EG.5.1.1.10, S:L455F, on C19983T branch, China/England/Denmark) with 19 seqs
1a77042 - Cornelius Roemer, 2023-09-01 23:36:02 +0200 : fix: Deduplicate JH aliasing by making XBB.1.5.3.1 alias to JK
acf9ccc - Cornelius Roemer, 2023-09-01 23:44:04 +0200 : Designate HS.1.1 (XBB.1.5.95.1.1, S:F456L, USA, from #2237) with 50 seqs
5636325 - HynnSpylor, 2023-09-02 05:49:04 +0800 : Update lineage_notes.txt (#2240)
7d172c1 - Federico Gueli, 2023-09-03 00:06:15 +0200 : Update lineage_notes.txt
b440995 - Yat-sing Ng, 2023-09-03 07:22:11 +0800 : Update lineage_notes.txt
2e0850a - Federico Gueli, 2023-09-03 11:54:15 +0200 : Update lineage_notes.txt
5d759d3 - aviczhl2, 2023-09-03 23:01:28 +0800 : Add 4 autoref from main page and 31 from lineage-proposals
59903c3 - Cornelius Roemer, 2023-09-04 14:40:39 +0200 : Designate HK.11 (S:G184S, China/England/SouthKorea, from #2255) with 50 seqs
4fa5b5f - Cornelius Roemer, 2023-09-04 14:52:59 +0200 : Designate JG.2 (EG.5.1.3.2, S:G75V, Europe, from #2249) with 50 seqs
68ae5bf - Cornelius Roemer, 2023-09-04 15:03:29 +0200 : Design...

pango designation v1.22

Release notes

ed6f4b2 - Cornelius Roemer, 2023-06-26 12:30:46 +0200 : Designate DV.7.1 (S:L455F, S:F456L, Spain/Austria, lineage-proposals#135) with 14 seqs
ca84b09 - Cornelius Roemer, 2023-06-26 12:35:59 +0200 : Designate GW.1 (XBB.1.19.1.1, ORF1a:D264N, N:M322V, China) with 140 seqs
23e89d6 - Cornelius Roemer, 2023-06-26 12:37:30 +0200 : Designate GW.2 (S:D936G, USA) with 100 seqs
83a1f8a - Cornelius Roemer, 2023-06-26 19:51:32 +0200 : Designate GY.1 (XBB.1.16.2.1, S:L84I, ORF1a:A4068S, China, from #2066) with 80 seqs
995d8c2 - Cornelius Roemer, 2023-06-26 20:12:17 +0200 : Designate GY.2 (XBB.1.16.2.2, S:T883I) with 25 seqs
664200c - Cornelius Roemer, 2023-06-26 20:15:56 +0200 : Designate BN.1.2.7 (N:N8S, C16332T, Taiwan, from #1923) with 80 seqs
939990f - Cornelius Roemer, 2023-06-26 20:31:09 +0200 : Designate GJ.1.2 (XBB.2.3.3.1.2, ORF1b:V1110I, from #2059) with 200 seqs
7fed7cc - Cornelius Roemer, 2023-06-28 13:33:09 +0200 : Designate FL.13.2 (S:K356T, China, from #2073) with 30 seqs
20e6497 - Cornelius Roemer, 2023-06-28 13:44:19 +0200 : Designate FL.18 (ORF1a:T2007I) with 800 seqs
c07ae4b - Cornelius Roemer, 2023-06-28 15:55:05 +0200 : Designate FL.18.1 (N:T166I, A27507C, from #2019) with 200 seqs
23cfb26 - Cornelius Roemer, 2023-06-28 16:00:13 +0200 : Designate FL.18.1.1 (S:Y200C, S:478R, Australia/Indonesia) with 20 seqs
8e3e5bb - Cornelius Roemer, 2023-06-28 18:44:32 +0200 : Designate XBB.1.5.88 (C2299T, South Africa) with 200 seqs
d535b36 - Cornelius Roemer, 2023-06-28 18:51:47 +0200 : Designate GZ.1 (XBB.2.3.4.1, S:F186L, India-GJ) with 80 seqs
b45620c - Cornelius Roemer, 2023-06-28 19:30:14 +0200 : Designate HA.1 (XBB.1.5.86.1, S:F456L (22930A), Brazil/Canada) and HA.2 (S:P521S, Brazil) with 50 seqs each
d973087 - Cornelius Roemer, 2023-06-28 19:37:49 +0200 : Designate XBB.1.5.89 (S:478R, S:554A, Canada/Italy/France) with 40 seqs
3e1a8b0 - Cornelius Roemer, 2023-06-28 21:22:02 +0200 : Add extra XBB.1.16.6 designations
aaee4fd - Cornelius Roemer, 2023-06-28 21:23:34 +0200 : Add extra XBB.1.16.9 designations
3c00ba8 - Cornelius Roemer, 2023-06-28 21:24:49 +0200 : Add extra FL.1.5.1 designations
5bb0fae - Cornelius Roemer, 2023-06-28 21:33:51 +0200 : Designate HB.1 (XBB.1.34.2.1, S:F456L (22928C), US/China/Canada, from sars-cov-2-variants/lineage-proposals#217) with 10 seqs
7f13742 - Cornelius Roemer, 2023-06-28 21:41:40 +0200 : Designate EG.2.1 (S:F456L (T22930A), S:V327I, Indonesia/US/Australia) with 5 seqs
c65ee84 - Cornelius Roemer, 2023-06-28 21:48:49 +0200 : Designate HC.1 (XBB.1.5.44.1, S:P631S, USA) with 30 seqs
971191a - Cornelius Roemer, 2023-06-28 21:53:40 +0200 : Designate FL.19 (XBB.1.9.1.18, T2377C) with 500 seqs
80a1671 - Cornelius Roemer, 2023-06-28 22:02:14 +0200 : Designate FU.3 (XBB.1.16.1.3, C11665T, India) with 190 seqs
4dd681b - Cornelius Roemer, 2023-06-28 23:08:12 +0200 : Designate BQ.1.1.79 (S:Q613H, C1594T, C16362T, T24079C, Greece) with 300 seqs
21b34b0 - Cornelius Roemer, 2023-06-29 23:29:20 +0200 : Designate FL.20 (S:F456L (22928C), S:Q52H, Spain, from #2072) with 20 seqs
1a8596e - Cornelius Roemer, 2023-06-29 23:50:07 +0200 : Designate XBB.1.31.1 (S:E553K, Indonesia) with 19 seqs
0dfab29 - Cornelius Roemer, 2023-06-29 23:53:31 +0200 : Designate FL.1.7 (S:478R, S:C1235F, Indonesia) with 30 seqs
33d7bbe - Cornelius Roemer, 2023-06-29 23:58:08 +0200 : Designate FL.1.1.1 (S:A688S, Australia/Mauritius) with 30 seqs
40d135d - Cornelius Roemer, 2023-06-30 00:08:51 +0200 : Designate FL.4.4 (ORF1a:T1542I, T24544C, S:478T (reversion), Indonesia) with 70 seqs
fd41be6 - Cornelius Roemer, 2023-06-30 00:11:54 +0200 : Designate FL.4.5 (ORF8:S67F, ORF1a:D1228G, C23635T) with 600 seqs
02d6085 - Cornelius Roemer, 2023-06-30 00:13:33 +0200 : Designate FL.4.6 (T5098C, C13965T, Australia/China) with 400 seqs
ec23e4a - Cornelius Roemer, 2023-06-30 00:18:40 +0200 : Designate FL.4.1.1 (S:K478R, ORF1a:I2286T, Indonesia/Australia) with 20 seqs
80dc246 - Cornelius Roemer, 2023-06-30 00:20:40 +0200 : Designate FL.4.7 (S:L452R, Singapore) with 20 seqs
6e6ced5 - Cornelius Roemer, 2023-06-30 11:56:49 +0200 : Designate GY.3 (S:M177I, Thailand) with 30 seqs
a76d1de - Cornelius Roemer, 2023-06-30 11:58:02 +0200 : Designate GY.2.1 (S:S255F, South Korea) with 20 seqs
1a630a8 - Cornelius Roemer, 2023-06-30 12:00:44 +0200 : Designate XBB.1.16.12 (S:Q52H, South Korea) with 60 seqs
c411680 - Cornelius Roemer, 2023-06-30 12:02:45 +0200 : Designate XBB.1.16.13 (ORF1a:G519S, ORF1a:G1101D, India) with 300 seqs
51bc6d4 - Cornelius Roemer, 2023-06-30 12:06:48 +0200 : Designate FL.21 (XBB.1.9.1.21, A10564T, South Korea/China) with 300 seqs
00647cb - Cornelius Roemer, 2023-06-30 12:08:34 +0200 : Designate FL.5.1 (S:M177T) with 100 seqs
2504a6d - Cornelius Roemer, 2023-06-30 12:10:57 +0200 : Designate EG.1.4.1 (S:P217L, South Korea) with 80 seqs
317f95f - Cornelius Roemer, 2023-06-30 12:13:20 +0200 : Designate GD.2 (S:L212S, Philippines) with 100 seqs
1809d78 - Cornelius Roemer, 2023-06-30 12:14:42 +0200 : Designate GD.3 (S:F59L, Russia) with 80 seqs
019df7f - Cornelius Roemer, 2023-06-30 12:16:39 +0200 : Designate EG.1.5 (S:S98F, Europe) with 90 seqs
8492ad8 - Cornelius Roemer, 2023-06-30 12:18:32 +0200 : Designate EG.8 (ORF1a:S2303F, Europe) with 130 seqs
73d070d - Cornelius Roemer, 2023-06-30 12:25:53 +0200 : Designate FL.22 (ORF1b:I1416V, T24184C) with 300 seqs
ea90ffe - Cornelius Roemer, 2023-06-30 12:27:24 +0200 : Designate FL.23 (ORF1b:V1132I, Philippines) with 200 seqs
3645109 - Cornelius Roemer, 2023-06-30 12:31:12 +0200 : Designate FY.6 (T2935C, ORF1a:A591V, France) with 180 seqs
01cf28d - Cornelius Roemer, 2023-07-09 15:56:14 +0200 : Designate CM.8.1.5 (S:K150E, S:Y248H, N:A155V, Philippines) with 20 seqs
662800b - Cornelius Roemer, 2023-07-09 16:14:16 +0200 : Designate CK.1.1.1. (S:E654K, G6742T, C8782T, Japan) and CK.1.3 (Mexico, S:F157L, S:G181V)
daeb496 - Cornelius Roemer, 2023-07-09 16:16:58 +0200 : Designate CK.1.4 (C25614T, C10228T, C25824T, C27741T) with 1k seqs
b5aedd0 - Cornelius Roemer, 2023-07-09 16:19:08 +0200 : Designate CK.1.5 (C9118T, C15951T, ORF1a:M3733V, on C25614T branch) with 500 seqs
c65d4df - Cornelius Roemer, 2023-07-09 16:27:05 +0200 : Designate FR.1.4 (A3715G, C15960T, on shared T2372C, C7318T, ORF1a:L293F branch with FR.1.1, China) with 100 seqs
9f92dc5 - Cornelius Roemer, 2023-07-09 16:30:26 +0200 : Designate GQ.1.1 (S:G213E, New Zealand) with 20 seqs
049c18c - Cornelius Roemer, 2023-07-09 16:34:28 +0200 : Designate FK.1.3.1 (S:E583D, Australia) and FK.1.3.2 (C9391T, T13596C, Australia/Japan)
ba63b28 - Cornelius Roemer, 2023-07-09 16:37:43 +0200 : Designate FK.1.5 (G5155A, C12439T, Australia/New Zealand) with 200 seqs
5cd7ffd - Cornelius Roemer, 2023-07-09 16:40:42 +0200 : Designate CJ.1.3.1 (S:R214S, ORF1a:G3578S, South Korea/Japan) with 40 seqs
f0582e1 - Cornelius Roemer, 2023-07-09 16:42:24 +0200 : Designate CJ.1.3.2 (S:D936H, South Korea) with 200 seqs
9e3c876 - Cornelius Roemer, 2023-07-09 19:07:57 +0200 : Designate EU.1.1.3 (S:F157L, Europe) with 60 seqs
c8cadb0 - Cornelius Roemer, 2023-07-09 19:10:44 +0200 : Designate FL.24 (S:Q613H, S:A688V) with 80 seqs
a2a5587 - Cornelius Roemer, 2023-07-09 19:14:23 +0200 : Add extra EG.7 designations
5648ff2 - Cornelius Roemer, 2023-07-10 11:43:01 +0200 : Designate XBB.1.16.14 (S:L452Q, after A11782G, India/France/Canada) with 25 seqs
6a905e3 - Cornelius Roemer, 2023-07-10 12:02:10 +0200 : Designate XBB.1.5.90 (S:P621S, ORF1ab:S6713L, Belgium/France) with 200 seqs
bf7f18a - Cornelius Roemer, 2023-07-10 12:04:27 +0200 : Designate XBB.1.5.91 (S:P621S, USA) with 400 seqs
cbbfabf - Cornelius Roemer, 2023-07-10 12:09:21 +0200 : Designate FL.25 (S:E554K, USA/England) with 120 seqs
83a6944 - Cornelius Roemer, 2023-07-10 12:11:49 +0200 : Designate FL.2.4 (ORF8:S67F, China) with 300 seqs
8a47ca9 - Cornelius Roemer, 2023-07-10 12:15:10 +0200 : Designate XCF.1 (S:F157L, USA) with 10 seqs
9a507d8 - Cornelius Roemer, 2023-07-10 12:16:20 +0200 : Designate XCF.2 (S:S929I, Canada) with 15 seqs
3115358 - Cornelius Roemer, 2023-07-10 12:20:14 +0200 : Designate FL.26 (C22264T) with 300 seqs
c2eaf5e - Cornelius Roemer, 2023-07-10 12:21:11 +0200 : Designate FL.26.1 (S:493L, Sweden) with 40 seqs
5780e06 - Cornelius Roemer, 2023-07-10 12:44:21 +0200 : Designate GK.2 (XBB.1.5.70.2, S:V511I) with 20 seqs
7c2e3c0 - Cornelius Roemer, 2023-07-11 11:16:57 +0200 : Add relevant issues to lineage notes
bb5a2d6 - Cornelius Roemer, 2023-07-11 17:48:45 +0200 : Designate FU.4 (S:Y453F, T29410C) with 12 seqs
4f8b6f0 - Cornelius Roemer, 2023-07-11 17:55:53 +0200 : Designate XBB.1.5.92 (ORF1a:T1168I, Ecuador) with 150 seqs
08e3e8b - Cornelius Roemer, 2023-07-11 18:02:21 +0200 : Designate XBB.1.5.93 (C337T, C19186T, USA, 77 seqs) and HD.1 (S:T346I, USA/Dominican Republic, 10 seqs)
115963b - Cornelius Roemer, 2023-07-13 01:27:06 +0200 : Designate XBB.1.16.15 (S:P521S, T10756C, T14067C, on C27513T branch) with 30 seqs
d951ada - Cornelius Roemer, 2023-07-13 23:41:53 +0200 : Designate GK.1.1 (XBB.1.5.70.1.1, S:T573I, Brazil) with 6 seqs
7afb37c - Cornelius Roemer, 2023-07-13 23:42:53 +0200 : Designate GK.1.2 (XBB.1.5.70.1.2, S:N185D, Brazil) with 7 seqs
fe717fc - Cornelius Roemer, 2023-07-13 23:44:22 +0200 : Designate GK.1.3 (ORF1a:E633A, ORF1b:D1130G, USA/Canada)
5420763 - Cornelius Roemer, 2023-07-13 23:45:59 +0200 : Designate additional GK.1 sequences
80108f5 - Cornelius Roemer, 2023-07-14 00:05:03 +0200 : Designate HE.1 (FE.1.1.1, S:V622I, ORF8:A55V, USA/Puerto Rico) with 180 seqs
c2d2412 - Cornelius Roemer, 2023-07-14 00:08:29 +0200 : Designate FE.1.1.3 (XBB.1.18.1.1.1.3, A24775G, China) with 75 seqs
aa955b5 - Cornelius Roemer, 2023-07-14 00:09:45 +0200 : Designate FE.1.1.4 (XBB.1.18.1.1.1.4, A4336G, T24073C, Brazil) with 50 seqs
c36d5d6 - Cornelius Roemer, 2023-07-14 00:33:35 +0200 : Designate HF.1 (XBB.1.16.13.1, S:K304N, South Korea/Japan) with 140 seqs
df3436b - Cornelius Roemer,...