Update python versions - 3.7 deprecation, 3.10 and 3.11 testing suppo…

…rt (#287)

* require greater than python3.8

* remove 3.7, add 3.10 and 3.11 to github actions

* close #259

* fix 3.10 version parsing in action actions/runner#1989

* bump read the docs python version

* update python versions in dev

* bump precommit version

* #279 (comment)

.devcontainer/devcontainer.json

@@ -3,7 +3,7 @@
 {
   "name": "Pycytominer Dev",
   // Or use a Dockerfile or Docker Compose file. More info: https://containers.dev/guide/dockerfile
-  "image": "mcr.microsoft.com/devcontainers/python:0-3.9",
+  "image": "mcr.microsoft.com/devcontainers/python:0-3.11",
   // Use 'postCreateCommand' to run commands after the container is created.
   "postCreateCommand": "bash .devcontainer/postCreateCommand.sh",
   // Configure tool-specific properties.

.github/workflows/python-app.yml

@@ -14,7 +14,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-        python-version: [3.7, 3.8, 3.9]
+        python-version: ["3.8", "3.9", "3.10", "3.11"]
         os: [ubuntu-latest, macos-latest]
     env:
       OS: ${{ matrix.os }}

.gitpod.yml

@@ -1,4 +1,4 @@
-image: gitpod/workspace-python-3.9
+image: gitpod/workspace-python-3.11
 tasks:
   - name: Install dependencies
     command: |

.readthedocs.yml

@@ -1,7 +1,7 @@
 version: 2
 
 python:
-  version: 3.7
+  version: 3.11
   install:
     - requirements: docs/requirements.txt
     - requirements: requirements.txt

requirements-dev.txt

@@ -1,3 +1,3 @@
 pytest>=5.0.1
 codecov>=2.1.12
-pre-commit==2.21.0
+pre-commit>=3.3.2

requirements.txt

@@ -1,5 +1,5 @@
 numpy>=1.16.5
-scipy>=1.3.0,<1.9
+scipy>=1.5
 pandas>=1.2.0
 scikit-learn>=0.21.2
 sqlalchemy>=1.3.6,<2

setup.py

@@ -36,6 +36,6 @@
         ],
         "dev": DEV_PKGS,
     },
-    python_requires=">=3.4",
+    python_requires=">=3.8",
     include_package_data=True,
 )