API Reference (Util Module)

List of structures

• pllmod_subst_model_t
• pllmod_mixture_model_t

List of flags

Flag	Description
PLLMOD_UTIL_MIXTYPE_FIXED
PLLMOD_UTIL_MIXTYPE_GAMMA	Mixture model linked to Gamma rate categories
PLLMOD_UTIL_MIXTYPE_FREE	Mixture model with free rates

List of functions

• unsigned int pllmod_util_subst_rate_count

• double * pllmod_util_get_equal_freqs

• double * pllmod_util_get_equal_rates

• pllmod_subst_model_t * pllmod_util_model_create_custom

• void pllmod_util_model_destroy

• pllmod_subst_model_t * pllmod_util_model_clone

• int * pllmod_util_model_string_to_sym

• pllmod_mixture_model_t * pllmod_util_model_mixture_create

• void pllmod_util_model_mixture_destroy

• pllmod_mixture_model_t * pllmod_util_model_mixture_clone

• unsigned int pllmod_util_model_count_dna

• char ** pllmod_util_model_names_dna

• int pllmod_util_model_exists_dna

• pllmod_subst_model_t * pllmod_util_model_info_dna

• unsigned int pllmod_util_model_count_protein

• char ** pllmod_util_model_names_protein

• int pllmod_util_model_exists_protein

• pllmod_subst_model_t * pllmod_util_model_info_protein

• int pllmod_util_model_set_protein

• int pllmod_util_model_exists_protmix

• pllmod_mixture_model_t * pllmod_util_model_info_protmix

• int pllmod_util_model_set_protmix

• unsigned int pllmod_util_model_count_genotype

• char ** pllmod_util_model_names_genotype

• int pllmod_util_model_exists_genotype

• pllmod_subst_model_t * pllmod_util_model_info_genotype

• double pllmod_algo_spr_round

Structure descriptions

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Function descriptions

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