Gene Set Enrichment Analysis Made Awesome

Installation

First install the Bioconductor dependencies:

source("http://bioconductor.org/biocLite.R")
biocLite(c("GO.db", "AnnotationDbi", "qvalue"))

Then install the devtools package, and use it to install GSEAMA:

install.packages("devtools")
devtools::install_github("dgrtwo/GSEAMA")

The package vignette can be downloaded here.

Name	Name	Last commit message	Last commit date
Latest commit dgrtwo Added qvalue to dependencies May 11, 2018 54913f2 · May 11, 2018 History 16 Commits
R	R	updated checking for packages that treemap depends on; also made shac…	Sep 19, 2016
_vignettes	_vignettes	Continued Brauer analysis, fixed one bug	Feb 7, 2016
data	data	Initial commit	Aug 22, 2014
inst/tests	inst/tests	Initial commit	Aug 22, 2014
man	man	finished initial treemap based layout and quick attempt at plotting, …	Sep 19, 2016
tests	tests	Initial commit	Aug 22, 2014
.Rbuildignore	.Rbuildignore	Many updates and changes for style and usability.	Jan 23, 2016
.gitignore	.gitignore	Many updates and changes for style and usability.	Jan 23, 2016
DESCRIPTION	DESCRIPTION	updated checking for packages that treemap depends on; also made shac…	Sep 19, 2016
GSEAMA.Rproj	GSEAMA.Rproj	Many updates and changes for style and usability.	Jan 23, 2016
LICENSE	LICENSE	Many updates and changes for style and usability.	Jan 23, 2016
NAMESPACE	NAMESPACE	finished initial treemap based layout and quick attempt at plotting, …	Sep 19, 2016
README.mkd	README.mkd	Added qvalue to dependencies	May 11, 2018