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Cleanup from readthough#1241

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SensibleSalmon wants to merge 24 commits intodoc/frenzydib-lab/khmer:doc/frenzyfrom doc/frenzy_2dib-lab/khmer:doc/frenzy_2Copy head branch name to clipboard

+337-255

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Commits on Aug 4, 2015

• much documentation updates

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Commits on Aug 7, 2015

• add links to cites

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• doc C++ support level

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• ISO C++ forbids variable length array

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• ccache

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• PEP8

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Commits on Aug 11, 2015

• initial changes

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• more cleanup

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• renamed load-into-counting to load-into-countingtable

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• s/load-graph/load-into-nodegraph/g

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• fixed doc listing

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• sanitized epilog to prevent formatting borkage

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• hack and slash

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• updated an example

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• Merge branch 'doc/frenzy' of github.com:dib-lab/khmer into doc/frenzy_2

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Commits on Aug 12, 2015

• misc changes

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• copyright stuff

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• Merge branch 'doc/frenzy' of github.com:dib-lab/khmer into doc/frenzy_2

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• added Changelog

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• added 'n occupied bins' to formats

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• pep8, changelog

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• Merge branch 'doc/frenzy' of github.com:dib-lab/khmer into doc/frenzy_2

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• changes I forgot to make

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• pep8

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